View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13021_low_25 (Length: 225)
Name: NF13021_low_25
Description: NF13021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13021_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 163; Significance: 3e-87; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 7 - 205
Target Start/End: Original strand, 11157271 - 11157469
Alignment:
| Q |
7 |
acatcatcattatcttcaatatacaaatttgtaagagaagtaaggctttggaaaccccattcaattaatggcggcatctttgttattctcacagatgcaa |
106 |
Q |
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|||||||||||||||| |||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
11157271 |
acatcatcattatctttaatatacaaatttgaaagataagtaaggctttggaaaccccattcaattaatggcggcatctttgttattctcacagatgtaa |
11157370 |
T |
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| Q |
107 |
tagaaattgtttgtaatttgggaggtaagaaaactccttcacatagtgcaaactctagttttggaagatgttcgagatacaaactttcaagagtggtga |
205 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | ||||||||| |||||||||| ||||| |
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| T |
11157371 |
tagaaattgtttgtaatttgggaggtaagaaaactccttcatatagtgcaaactctagttttggaagatggtggagatacaatctttcaagagcggtga |
11157469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 9 - 205
Target Start/End: Original strand, 11128282 - 11128478
Alignment:
| Q |
9 |
atcatcattatcttcaatatacaaatttgtaagagaagtaaggctttggaaaccccattcaattaatggcggcatctttgttattctcacagatgcaata |
108 |
Q |
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||||||||| |||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
11128282 |
atcatcattctctttaatatacaaatatgaaagagaagtaaggctttggaaaccccattcaattaatggcggcatctttgttattctcacagatgtaata |
11128381 |
T |
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| Q |
109 |
gaaattgtttgtaatttgggaggtaagaaaactccttcacatagtgcaaactctagttttggaagatgttcgagatacaaactttcaagagtggtga |
205 |
Q |
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| T |
11128382 |
gaaattgtttgtaatttgggaggtaagaaaactccttcacatagtgacaactctagttttggaagatggtggagatacaaaatttcaagagtggtga |
11128478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 9 - 205
Target Start/End: Original strand, 11146104 - 11146303
Alignment:
| Q |
9 |
atcatcattatcttcaatatacaaatttgtaagagaagtaaggctttggaaacccc---attcaattaatggcggcatctttgttattctcacagatgca |
105 |
Q |
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|||||||||||||||||| | ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
11146104 |
atcatcattatcttcaattttcaaatttgtaagagaagtaaggctttggaaacccccccattcaattaatggcggcatctttgttattctcacagatgca |
11146203 |
T |
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| Q |
106 |
atagaaattgtttgtaatttgggaggtaagaaaactccttcacatagtgcaaactctagttttggaagatgttcgagatacaaactttcaagagtggtga |
205 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| ||||||||||||||| |||| |
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| T |
11146204 |
atagaaattgtttgtaatttgggaggtaagaaaactccttcacatagtgacaactctagttttggaagatggcggagactcaaactttcaagagttgtga |
11146303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 7 - 205
Target Start/End: Complemental strand, 8864104 - 8863906
Alignment:
| Q |
7 |
acatcatcattatcttcaatatacaaatttgtaagagaagtaaggctttggaaaccccattcaattaatggcggcatctttgttattctcacagatgcaa |
106 |
Q |
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|||||||||||||||| |||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || |
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| T |
8864104 |
acatcatcattatctttaatatacaaatttgaaagataagtaaggctttggaaaccccattcaattaatggcggcatctttgttattcttacagatgtaa |
8864005 |
T |
|
| Q |
107 |
tagaaattgtttgtaatttgggaggtaagaaaactccttcacatagtgcaaactctagttttggaagatgttcgagatacaaactttcaagagtggtga |
205 |
Q |
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|| |||||||||| ||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| | || || ||| |||||||||||||||| |
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| T |
8864004 |
tataaattgtttgcaatttgggaggtaagaaaactccttcatatagtgcaaactcaagttttggaagatggtagaaatgcaatctttcaagagtggtga |
8863906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 9 - 205
Target Start/End: Complemental strand, 10892122 - 10891926
Alignment:
| Q |
9 |
atcatcattatcttcaatatacaaatttgtaagagaagtaaggctttggaaaccccattcaattaatggcggcatctttgttattctcacagatgcaata |
108 |
Q |
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|||||||||||||| ||||||||| |||| |||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |
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| T |
10892122 |
atcatcattatctttaatatacaattttgaaagataagtaaggctttggaaaccccattcaattaatggcggcatttttgttattctcacagatttaata |
10892023 |
T |
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| Q |
109 |
gaaattgtttgtaatttgggaggtaagaaaactccttcacatagtgcaaactctagttttggaagatgttcgagatacaaactttcaagagtggtga |
205 |
Q |
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||||| |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| || | |||| ||||| |||||||| ||||| |
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| T |
10892022 |
gaaatggtttgtaatttgggaggtaagaaaactccttcgcatggtgcaaactctagttttggaagctgatggagactcaaacattcaagagaggtga |
10891926 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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