View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13021_low_3 (Length: 575)
Name: NF13021_low_3
Description: NF13021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13021_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 480; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 5 - 558
Target Start/End: Original strand, 8398302 - 8398852
Alignment:
| Q |
5 |
tgtcgaagaaaatatcatttaaggttgtgtttatgcaagagttgctcttcaaacccagacacacttgcatttgtatgtagtgttcaaccttgcgttaaca |
104 |
Q |
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| T |
8398302 |
tgtccaagtaaatatcatttaaggttgtatttatgcaagagttgctcttcaaacccagacacacttgcatttgtatgtagtgttcaaccttgcgttaaca |
8398401 |
T |
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| Q |
105 |
attgtagttgtctgaaattcataggttgtttgccttctcaatcaatacgaacttctccataaataaagatgctttgtatgtagaaaatagaaataatttc |
204 |
Q |
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| T |
8398402 |
gttgtagttgtctgaaattcataggttgtttgccttctcaatcaatacgaacttctccataaataaagatgctttgtatgtagaaaatagaaaaaatttc |
8398501 |
T |
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| Q |
205 |
atgcattcatgagtggaaattttgccgaaaatatttataggtcatttcttctattcttaacggtagtagttgaggaaaccttgttttgtgaaatataatt |
304 |
Q |
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| T |
8398502 |
atgcattcatgagtggaaattttgccgaaaatatttataggtcatttcttctattcttaacg---gtagttgaggaaaccttgttttgtgaaatataatt |
8398598 |
T |
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| Q |
305 |
gatcaatacatttgatttgnnnnnnnngaagtaactgatcaataatacatttgatgtgagttgaaattaatataaaagtttccaaaatattttgaaggag |
404 |
Q |
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| T |
8398599 |
gatcaatacatttgatttgttttttttgaagtaacttatcaataatacatttgatgtgagttgaaattaatataaaagtttccaaaatattttgaaggag |
8398698 |
T |
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| Q |
405 |
atttgcctatcatacaatttacattcgattcatataaattggtgagagcggatcaaatataaagcttagtgctgatacatgtttttaaattatttgtacg |
504 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
8398699 |
atttgcctttcatacaatttacattcgattcatataaattggtgagagcggatcaaatataaagcttagtgctgacacatgtttttaaattatttgtaca |
8398798 |
T |
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| Q |
505 |
atcatcatcatcacgatgtttatccttttttcttcttcaagtattttgaaaagt |
558 |
Q |
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| T |
8398799 |
atcatcatcatcacgatgtttatccttttttcttcttcaagtattttgaaaagt |
8398852 |
T |
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