View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13021_low_5 (Length: 485)
Name: NF13021_low_5
Description: NF13021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13021_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 364; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 74 - 461
Target Start/End: Complemental strand, 962781 - 962395
Alignment:
| Q |
74 |
cagttatgagtataataagataagatatagtaattaccagcataacatgtaattgaaagtgacgaattctgcatataggatcacccaataggtcagtaac |
173 |
Q |
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| T |
962781 |
cagttatgagtataataagataagatatagtaattaccagcataacatgtaattgaaagtgacgaattctacatataggatcacccaataggtcagtaac |
962682 |
T |
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| Q |
174 |
aagagaaggttttcctctttgtccaacctcacaaagcctctccaatttttctactcccactttgtgtttctcttcatcataacttcttatctctatcact |
273 |
Q |
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| T |
962681 |
aagagaaggttttcctctttgtccaacctcacaaagcctctccaatttttctactcccactttgtgtttctcttcatcataacttcttatcactatcact |
962582 |
T |
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| Q |
274 |
gcctcttcaaccttctttgatgatggtttttgccaattttcggctgctatcttcaaagacattgtgtataatataaatctttagaatagtagttagcaaa |
373 |
Q |
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| T |
962581 |
gcctcttcaaccttctttgatgatggtttttgccaattttcagctgctatcttcaaagacattgtgtataatataaatctttagaatggtagttagcaaa |
962482 |
T |
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| Q |
374 |
agataaaaaagattaataatgtgtttaatatttatgatatatggatttgttcttgatggtagtgattagcttctatgaactttcaatg |
461 |
Q |
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| T |
962481 |
agataaaaaagattaataatgtgtttaatatttatgatat-tggatttgttcttgatggtagtgattagcttctatgaactttcaatg |
962395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 962854 - 962819
Alignment:
| Q |
1 |
actttattttataataatttctccttctcgatcaac |
36 |
Q |
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| T |
962854 |
actttattttataataatttctccttctcgatcaac |
962819 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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