View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13021_low_6 (Length: 443)
Name: NF13021_low_6
Description: NF13021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13021_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 150; Significance: 4e-79; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 279 - 428
Target Start/End: Complemental strand, 33120464 - 33120315
Alignment:
| Q |
279 |
aaagctatattaattgtaacaaaaatataaattataacactaatgtgtgatatatatgttttttcagatacggcaaagtacatccaagagcttaagaaac |
378 |
Q |
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| T |
33120464 |
aaagctatattaattgtaacaaaaatataaattataacactaatgtgtgatatatatgttttttcagatacggcaaagtacatccaagagcttaagaaac |
33120365 |
T |
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| Q |
379 |
tgttacaaactccaactgaaataacagtggtgctttcgtttctgattttt |
428 |
Q |
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| T |
33120364 |
tgttacaaactccaactgaaataacagtggtgctttcgtttctgattttt |
33120315 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 17 - 188
Target Start/End: Complemental strand, 33120699 - 33120521
Alignment:
| Q |
17 |
tcgatactttttaatatgtttaattgtttaattaaattcgaga-------taattaattttattaactatgtagggagcataagcaagaactctcccact |
109 |
Q |
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| T |
33120699 |
tcgatactttttaatatttttaattgcttaattaaattcgagaatatgtataattaattttattaactatgtagggagcataagcaagaactctcccact |
33120600 |
T |
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| Q |
110 |
atggtcaaaagatcaacatcatcctcagtagactgaggaagcagatcacggtctgtcgtcaacaaataggtcagtaaat |
188 |
Q |
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| T |
33120599 |
atggtcaaaagatcaacatcatcctcagtagactgaggaagcagatcacggtctgtcgtcaacaaataggtcagtaaat |
33120521 |
T |
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