View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13021_low_7 (Length: 426)
Name: NF13021_low_7
Description: NF13021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13021_low_7 |
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| [»] scaffold0302 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 390; Significance: 0; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 7 - 408
Target Start/End: Original strand, 1193818 - 1194219
Alignment:
| Q |
7 |
gtgagatgaagccgatgtttgcaacatcaattgggttaaaagactaaaatgaatcttaatttaaggctattgtttttgcagtttaattgtccgttcaaca |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
1193818 |
gtgagatgaagccgatgtttgcaacatcaattgggttaaaagactaaaatgaatcttaatttaaggctattgtttttgcagtttaattgtccattcaaca |
1193917 |
T |
|
| Q |
107 |
gaaaatattggttgaaaggttgtaagataagtatagaatatgtgatgtggaaatggaaaaaggaagcgaatcaaatagccaacttgttagcaaaagtatg |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
1193918 |
gaaaatattggttgaaaggttgtaagataagtatagaatatgtgatgtggaaatggaaaaaggaagcaaatcaaatagccaacttgttagcaaaagtatg |
1194017 |
T |
|
| Q |
207 |
atcacaaatggatggcaacagaatatccaggcgtctatgtagataatgcagttctgccgagttctatttttgtagctgttgcagtatttttgcgtccgtc |
306 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1194018 |
atcacaaatgggtggcaacagaatatccaggcgtctatgtagataatgcagttctgccgagttctatttttgtagctgttgcagtatttttgcgtccgtc |
1194117 |
T |
|
| Q |
307 |
gtgttcaagggatttttccttctggtggtcctatgcagtttgctggctgcagcatagttggtgttgatatttttgcatctgtcatgtgtttttaggtgat |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1194118 |
gtgttcaagggatttttccttctggtggtcctatgcagtttgctggctgcagcatagttggtgttgatatttttgcatctgtcatgtgtttttaggtgat |
1194217 |
T |
|
| Q |
407 |
aa |
408 |
Q |
| |
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|| |
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|
| T |
1194218 |
aa |
1194219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 7 - 145
Target Start/End: Complemental strand, 1236870 - 1236732
Alignment:
| Q |
7 |
gtgagatgaagccgatgtttgcaacatcaattgggttaaaagactaaaatgaatcttaatttaaggctattgtttttgcagtttaattgtccgttcaaca |
106 |
Q |
| |
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|||||||||||||||||||||||||||||||||| ||||||| || |||||||||| | |||||||| |||||||||||||| || |||||| |||| || |
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| T |
1236870 |
gtgagatgaagccgatgtttgcaacatcaattggtttaaaaggctcaaatgaatctgagtttaaggcaattgtttttgcagtctagttgtcctttcagca |
1236771 |
T |
|
| Q |
107 |
gaaaatattggttgaaaggttgtaagataagtatagaat |
145 |
Q |
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||||||||||||||||||||| | |||| |||| ||||| |
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| T |
1236770 |
gaaaatattggttgaaaggttattagattagtacagaat |
1236732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 314 - 395
Target Start/End: Original strand, 1183283 - 1183364
Alignment:
| Q |
314 |
agggatttttccttctggtggtcctatgcagtttgctggctgcagcatagttggtgttgatatttttgcatctgtcatgtgt |
395 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
1183283 |
agggagttttccttctggtggtcctatgcagtttgctggctgcagcatagttggggttgatatttttgcatctgtcatgtgt |
1183364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 9 - 145
Target Start/End: Original strand, 1182887 - 1183023
Alignment:
| Q |
9 |
gagatgaagccgatgtttgcaacatcaattgggttaaaagactaaaatgaatcttaatttaaggctattgtttttgcagtttaattgtccgttcaacaga |
108 |
Q |
| |
|
||||||||||||||||||| |||||||||||| |||||||||| ||| |||||| | |||||||| ||| |||||||||| || |||| ||||| ||| |
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| T |
1182887 |
gagatgaagccgatgtttgtaacatcaattggtttaaaagactcaaacgaatctgagtttaaggcaattctttttgcagtctagcggtcctttcaaaaga |
1182986 |
T |
|
| Q |
109 |
aaatattggttgaaaggttgtaagataagtatagaat |
145 |
Q |
| |
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|||||||||||||||||||||| || ||||||||||| |
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| T |
1182987 |
aaatattggttgaaaggttgtaggagaagtatagaat |
1183023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 37 - 145
Target Start/End: Original strand, 897601 - 897709
Alignment:
| Q |
37 |
ttgggttaaaagactaaaatgaatcttaatttaaggctattgtttttgcagtttaattgtccgttcaacagaaaatattggttgaaaggttgtaagataa |
136 |
Q |
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|
|||| |||||||||| |||| ||||| | |||||| | ||||||||||||||||| || ||| ||||||||||||||||||||||||||||||||||||| |
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| T |
897601 |
ttggtttaaaagactcaaataaatctgagtttaagacaattgtttttgcagtttagttttcctttcaacagaaaatattggttgaaaggttgtaagataa |
897700 |
T |
|
| Q |
137 |
gtatagaat |
145 |
Q |
| |
|
||||||||| |
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|
| T |
897701 |
gtatagaat |
897709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 163 - 300
Target Start/End: Complemental strand, 1236609 - 1236472
Alignment:
| Q |
163 |
aaaaaggaagcgaatcaaatagccaacttgttagcaaaagtatgatcacaaatggatggcaacagaatatccaggcgtctatgtagataatgcagttctg |
262 |
Q |
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|
||||||||||| |||||||||||| |||||||| ||| | | ||||||| ||||||| ||| ||||||| ||| | ||||||||||||||| |||| |
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| T |
1236609 |
aaaaaggaagccaatcaaatagccgacttgttaataaatgaaggatcacagatggatgacaattgaatatctaggttttgatgtagataatgcaggtctg |
1236510 |
T |
|
| Q |
263 |
ccgagttctatttttgtagctgttgcagtatttttgcg |
300 |
Q |
| |
|
| |||||| ||||||||||||||||| | |||||||| |
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| T |
1236509 |
caaagttctgtttttgtagctgttgcactctttttgcg |
1236472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 315 - 379
Target Start/End: Complemental strand, 1236433 - 1236369
Alignment:
| Q |
315 |
gggatttttccttctggtggtcctatgcagtttgctggctgcagcatagttggtgttgatatttt |
379 |
Q |
| |
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|||| |||||||||||| |||||||||||||||||||| ||||||||| |||||||||||||||| |
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| T |
1236433 |
gggagttttccttctggcggtcctatgcagtttgctggttgcagcatatttggtgttgatatttt |
1236369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0302 (Bit Score: 55; Significance: 2e-22; HSPs: 3)
Name: scaffold0302
Description:
Target: scaffold0302; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 9 - 127
Target Start/End: Original strand, 20067 - 20184
Alignment:
| Q |
9 |
gagatgaagccgatgtttgcaacatcaattgggttaaaagactaaaatgaatcttaatttaaggctattgtttttgcagtttaattgtccgttcaacaga |
108 |
Q |
| |
|
|||||||||| |||||||| ||||||||||| |||||||||| |||||||||| | |||||||| |||||||||||||| || || ||| ||||| | |
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| T |
20067 |
gagatgaagctgatgtttgtgacatcaattggtttaaaagactcaaatgaatctgagtttaaggcaattgtttttgcagtctagttttcctttcaa-aat |
20165 |
T |
|
| Q |
109 |
aaatattggttgaaaggtt |
127 |
Q |
| |
|
||||||||||||||||||| |
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|
| T |
20166 |
aaatattggttgaaaggtt |
20184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0302; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 315 - 396
Target Start/End: Original strand, 20472 - 20553
Alignment:
| Q |
315 |
gggatttttccttctggtggtcctatgcagtttgctggctgcagcatagttggtgttgatatttttgcatctgtcatgtgtt |
396 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||| | | ||||||||| ||||||||||| |||||||||||||| |
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| T |
20472 |
gggatttttccttctggtggtcctatacagtttgctggcagtaacatagttggagttgatattttgtgatctgtcatgtgtt |
20553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0302; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 166 - 276
Target Start/End: Original strand, 20295 - 20405
Alignment:
| Q |
166 |
aaggaagcgaatcaaatagccaacttgttagcaaaagtatgatcacaaatggatggcaacagaatatccaggcgtctatgtagataatgcagttctgccg |
265 |
Q |
| |
|
|||||||| ||||||||| || ||| ||||| ||||||| ||| || || |||||||| |||||||| ||| || |||| |||||||||| ||||||| |
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|
| T |
20295 |
aaggaagctaatcaaataaccgactcgttagtaaaagtaggattacgaactgatggcaatagaatatctaggtttcaatgtggataatgcaggtctgccg |
20394 |
T |
|
| Q |
266 |
agttctatttt |
276 |
Q |
| |
|
|||||| |||| |
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|
| T |
20395 |
agttctgtttt |
20405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 315 - 396
Target Start/End: Original strand, 12857383 - 12857464
Alignment:
| Q |
315 |
gggatttttccttctggtggtcctatgcagtttgctggctgcagcatagttggtgttgatatttttgcatctgtcatgtgtt |
396 |
Q |
| |
|
||||||||||||||| ||||||||||||| ||||||| | ||||||||||||| ||||||||||| ||| ||||||||||| |
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|
| T |
12857383 |
gggatttttccttctagtggtcctatgcaatttgctgacagcagcatagttggagttgatattttgtcatatgtcatgtgtt |
12857464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 337 - 396
Target Start/End: Complemental strand, 20256510 - 20256451
Alignment:
| Q |
337 |
ctatgcagtttgctggctgcagcatagttggtgttgatatttttgcatctgtcatgtgtt |
396 |
Q |
| |
|
|||||||||||| |||||||| ||||||||| ||||||||||| ||||||||||||||| |
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|
| T |
20256510 |
ctatgcagtttgttggctgcaacatagttggagttgatattttgtcatctgtcatgtgtt |
20256451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 62
Target Start/End: Complemental strand, 20256919 - 20256866
Alignment:
| Q |
9 |
gagatgaagccgatgtttgcaacatcaattgggttaaaagactaaaatgaatct |
62 |
Q |
| |
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||||||| || |||||||| ||||||||||| |||||||||| |||||||||| |
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|
| T |
20256919 |
gagatgaggctgatgtttgggacatcaattggcttaaaagactcaaatgaatct |
20256866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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