View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13021_low_9 (Length: 402)

Name: NF13021_low_9
Description: NF13021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13021_low_9
NF13021_low_9
[»] chr5 (4 HSPs)
chr5 (125-395)||(26353911-26354181)
chr5 (131-394)||(9815899-9816162)
chr5 (18-135)||(26353771-26353888)
chr5 (55-105)||(9816224-9816274)
[»] chr3 (16 HSPs)
chr3 (128-380)||(20015188-20015440)
chr3 (131-388)||(20007262-20007519)
chr3 (255-349)||(26654058-26654152)
chr3 (53-105)||(20015077-20015129)
chr3 (308-366)||(20033501-20033559)
chr3 (308-360)||(26647903-26647955)
chr3 (67-146)||(26648261-26648343)
chr3 (324-388)||(19951995-19952059)
chr3 (203-286)||(20046985-20047068)
chr3 (154-212)||(54116940-54116998)
chr3 (284-349)||(19956994-19957059)
chr3 (308-357)||(20006421-20006470)
chr3 (330-380)||(19849875-19849925)
chr3 (316-348)||(19813194-19813226)
chr3 (228-296)||(19819505-19819573)
chr3 (228-296)||(19839401-19839469)
[»] chr1 (2 HSPs)
chr1 (308-392)||(1718087-1718171)
chr1 (265-360)||(38483820-38483915)
[»] chr8 (1 HSPs)
chr8 (305-373)||(22685504-22685572)
[»] scaffold0038 (1 HSPs)
scaffold0038 (317-356)||(19562-19601)
[»] chr6 (1 HSPs)
chr6 (317-356)||(28219064-28219103)


Alignment Details
Target: chr5 (Bit Score: 251; Significance: 1e-139; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 125 - 395
Target Start/End: Original strand, 26353911 - 26354181
Alignment:
Q  125 tcccagttgaaaattcagaatctgctaaagaggatgaagaacaatggttgactaaatgtttcgatttcaacacatgcgtacaatcctcaacagatctgga 224  Q
    |||| ||| |||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||    
T  26353911 tccctgttaaaaattcagaatttgctaaagaggatgaagaacaatggttgactaaatttttcgatttcaacacatgcgtgcaatcctcaacagatctgga 26354010  T
Q  225 aggagcagcaatattttgagcagctatcatacaatcatgggcagaaatttcagcaggaacatcatcacaaaaattttgataattaagaatgtcaacaaga 324  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26354011 aggagcagcaatattttgagcagctatcatacaatcatgggcagaaatttcagcaggaacatcatcacaaaaattttgataattaagaatgtcaacaaga 26354110  T
Q  325 ttgggaggaaatccaggtggaacaccaacatcattaatacttctgttagtttttccaacatgagctctgtg 395  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26354111 ttgggaggaaatccaggtggaacaccaacatcattaatacttctgttagtttttccaacatgagctctgtg 26354181  T

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Target: chr5; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 131 - 394
Target Start/End: Complemental strand, 9816162 - 9815899
Alignment:
Q  131 ttgaaaattcagaatctgctaaagaggatgaagaacaatggttgactaaatgtttcgatttcaacacatgcgtacaatcctcaacagatctggaaggagc 230  Q
    |||||| |||| ||||| |||||||||||| |||||| ||||||| |||||  || ||||| |||||| || |||||||||||| |||  ||||||||||    
T  9816162 ttgaaagttcaaaatcttctaaagaggatggagaacattggttgattaaatacttagattttaacacaggcttacaatcctcaatagacatggaaggagc 9816063  T
Q  231 agcaatattttgagcagctatcatacaatcatgggcagaaatttcagcaggaacatcatcacaaaaattttgataattaagaatgtcaacaagattggga 330  Q
    |  ||||| || | ||||||||||||||||||  |||||| ||||||||||||||||| ||||||  |||  |  |||||||| ||||||||||||||||    
T  9816062 atgaatatgttcatcagctatcatacaatcatcagcagaactttcagcaggaacatcaacacaaagctttccaacattaagaaggtcaacaagattggga 9815963  T
Q  331 ggaaatccaggtggaacaccaacatcattaatacttctgttagtttttccaacatgagctctgt 394  Q
    |||||| ||||||||| |||||||||||||  |||||||| | ||||||| ||||||| |||||    
T  9815962 ggaaattcaggtggaaaaccaacatcattacaacttctgtcaatttttcctacatgagatctgt 9815899  T

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Target: chr5; HSP #3
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 18 - 135
Target Start/End: Original strand, 26353771 - 26353888
Alignment:
Q  18 aacagttacattgttggacgcagagacnnnnnnngtgatagaaaaccgtttgctttcaccttgagtctcagataaacagactctgtcaatcatccttgct 117  Q
    |||||||||||||||||||| ||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26353771 aacagttacattgttggacgaagagactttttttgtgatagaaaaccgtttgctttcaccttgagtctcagataaacagactctgtcaatcatccttgct 26353870  T
Q  118 tctttgttcccagttgaa 135  Q
    |||||||||||| |||||    
T  26353871 tctttgttcccatttgaa 26353888  T

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Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 55 - 105
Target Start/End: Complemental strand, 9816274 - 9816224
Alignment:
Q  55 atagaaaaccgtttgctttcaccttgagtctcagataaacagactctgtca 105  Q
    ||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  9816274 atagaaaagtgtttgctttcaccttgagtctcagataaacagactctgtca 9816224  T

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Target: chr3 (Bit Score: 133; Significance: 5e-69; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 128 - 380
Target Start/End: Original strand, 20015188 - 20015440
Alignment:
Q  128 cagttgaaaattcagaatctgctaaagaggatgaagaacaatggttgactaaatgtttcgatttcaacacatgcgtacaatcctcaacagatctggaagg 227  Q
    ||||||||| |||| |||||| ||||||||||||||||||||||||||||||||| || |||||||||||| || ||| ||||||||||||  |||||||    
T  20015188 cagttgaaagttcaaaatctgataaagaggatgaagaacaatggttgactaaatgcttagatttcaacacaggcttactatcctcaacagacatggaagg 20015287  T
Q  228 agcagcaatattttgagcagctatcatacaatcatgggcagaaatttcagcaggaacatcatcacaaaaattttgataattaagaatgtcaacaagattg 327  Q
    |||| ||||||||| | ||||| || ||||| |||| |||||| || |||||||| ||||||| ||||| |||  ||| ||||||| |||||||||||||    
T  20015288 agcatcaatattttcatcagctgtcgtacaaacatgagcagaacttccagcaggagcatcatcgcaaaattttccatacttaagaaggtcaacaagattg 20015387  T
Q  328 ggaggaaatccaggtggaacaccaacatcattaatacttctgttagtttttcc 380  Q
    |||  |||||||||||||||||||||||||||| | |||||||||||||||||    
T  20015388 ggacaaaatccaggtggaacaccaacatcattactgcttctgttagtttttcc 20015440  T

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Target: chr3; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 131 - 388
Target Start/End: Original strand, 20007262 - 20007519
Alignment:
Q  131 ttgaaaattcagaatctgctaaagaggatgaagaacaatggttgactaaatgtttcgatttcaacacatgcgtacaatcctcaacagatctggaaggagc 230  Q
    |||||| |||| ||||| ||||||||||||||||||||||||||  |||||| || |||||||||||| || |||| ||| ||| ||||  ||  |||||    
T  20007262 ttgaaagttcaaaatcttctaaagaggatgaagaacaatggttggttaaatgcttggatttcaacacaggcttacagtccccaaaagatacggccggagc 20007361  T
Q  231 agcaatattttgagcagctatcatacaatcatgggcagaaatttcagcaggaacatcatcacaaaaattttgataattaagaatgtcaacaagattggga 330  Q
    | ||||||||    |||||  ||  |||||||| |||| | ||||||||||||||||||||||||| |||  | ||  ||||   |||||||||||||||    
T  20007362 atcaatatttccttcagcttccacgcaatcatgagcaggattttcagcaggaacatcatcacaaaattttccaaaaacaagagcatcaacaagattggga 20007461  T
Q  331 ggaaatccaggtggaacaccaacatcattaatacttctgttagtttttccaacatgag 388  Q
    ||||||||||||||||||||||||||| |   ||||||||||| || ||| |||||||    
T  20007462 ggaaatccaggtggaacaccaacatcaatccaacttctgttagattgtcctacatgag 20007519  T

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Target: chr3; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 255 - 349
Target Start/End: Complemental strand, 26654152 - 26654058
Alignment:
Q  255 acaatcatgggcagaaatttcagcaggaacatcatcacaaaaattttgataattaagaatgtcaacaagattgggaggaaatccaggtggaacac 349  Q
    ||||||||| |||||| ||||||||||||||||| ||||||| |||  |||| || || ||||||||||||||||||||||||||||||||||||    
T  26654152 acaatcatgagcagaattttcagcaggaacatcagcacaaaattttccataaatatgagtgtcaacaagattgggaggaaatccaggtggaacac 26654058  T

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Target: chr3; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 53 - 105
Target Start/End: Original strand, 20015077 - 20015129
Alignment:
Q  53 tgatagaaaaccgtttgctttcaccttgagtctcagataaacagactctgtca 105  Q
    ||||||||||| ||||||||||| |||||||||||||||||||||||||||||    
T  20015077 tgatagaaaactgtttgctttcagcttgagtctcagataaacagactctgtca 20015129  T

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Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 308 - 366
Target Start/End: Original strand, 20033501 - 20033559
Alignment:
Q  308 taagaatgtcaacaagattgggaggaaatccaggtggaacaccaacatcattaatactt 366  Q
    ||||| |||||||||||||||||||||||||||||| ||||||| |||||||| |||||    
T  20033501 taagagtgtcaacaagattgggaggaaatccaggtgcaacaccatcatcattactactt 20033559  T

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Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 308 - 360
Target Start/End: Complemental strand, 26647955 - 26647903
Alignment:
Q  308 taagaatgtcaacaagattgggaggaaatccaggtggaacaccaacatcatta 360  Q
    ||||| |||||||||||||||||||||| ||||| ||||||||||||||||||    
T  26647955 taagagtgtcaacaagattgggaggaaaaccagggggaacaccaacatcatta 26647903  T

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Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 67 - 146
Target Start/End: Complemental strand, 26648343 - 26648261
Alignment:
Q  67 ttgctttcaccttgagtctcagataaacagactctgtcaat---catccttgcttctttgttcccagttgaaaattcagaatc 146  Q
    ||||||||||||||||||||||||||||||||||||||| |   ||||||||||| |||| ||||| ||| |  |||||||||    
T  26648343 ttgctttcaccttgagtctcagataaacagactctgtcattagacatccttgcttgtttgctcccatttgcatcttcagaatc 26648261  T

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Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 324 - 388
Target Start/End: Complemental strand, 19952059 - 19951995
Alignment:
Q  324 attgggaggaaatccaggtggaacaccaacatcattaatacttctgttagtttttccaacatgag 388  Q
    ||||| ||||||||||||||||||||||||| |||||  |||| |||||| |||||| |||||||    
T  19952059 attggtaggaaatccaggtggaacaccaacaacattaccacttatgttagcttttcctacatgag 19951995  T

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Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 203 - 286
Target Start/End: Complemental strand, 20047068 - 20046985
Alignment:
Q  203 tacaatcctcaacagatctggaaggagcagcaatattttgagcagctatcatacaatcatgggcagaaatttcagcaggaacat 286  Q
    |||||||||||  |||| |||||| |||| ||||||||| | ||||| ||  ||||||||| |||||| |||||||||||||||    
T  20047068 tacaatcctcagtagatatggaagaagcaacaatattttcaacagctttcgcacaatcatgtgcagaattttcagcaggaacat 20046985  T

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Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 154 - 212
Target Start/End: Complemental strand, 54116998 - 54116940
Alignment:
Q  154 gaggatgaagaacaatggttgactaaatgtttcgatttcaacacatgcgtacaatcctc 212  Q
    ||||| ||||||| |||||||| |||||| || ||||||||||||||| ||||||||||    
T  54116998 gaggacgaagaactatggttgattaaatgcttggatttcaacacatgcttacaatcctc 54116940  T

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Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 284 - 349
Target Start/End: Complemental strand, 19957059 - 19956994
Alignment:
Q  284 catcatcacaaaaattttgataattaagaatgtcaacaagattgggaggaaatccaggtggaacac 349  Q
    |||||||||||| ||||| | || ||||| | |||||||||||||||| |||||||||| ||||||    
T  19957059 catcatcacaaacattttcaaaagtaagagtatcaacaagattgggagaaaatccaggttgaacac 19956994  T

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Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 308 - 357
Target Start/End: Original strand, 20006421 - 20006470
Alignment:
Q  308 taagaatgtcaacaagattgggaggaaatccaggtggaacaccaacatca 357  Q
    ||||| || |||||||||||||||||||||||  ||||||||||||||||    
T  20006421 taagagtgccaacaagattgggaggaaatccatctggaacaccaacatca 20006470  T

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Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 330 - 380
Target Start/End: Complemental strand, 19849925 - 19849875
Alignment:
Q  330 aggaaatccaggtggaacaccaacatcattaatacttctgttagtttttcc 380  Q
    |||||||||| |||||| |||||||||||||  ||||||||||| ||||||    
T  19849925 aggaaatccaagtggaaaaccaacatcattaccacttctgttagcttttcc 19849875  T

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Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 316 - 348
Target Start/End: Complemental strand, 19813226 - 19813194
Alignment:
Q  316 tcaacaagattgggaggaaatccaggtggaaca 348  Q
    ||||||||||||||||||||| |||||||||||    
T  19813226 tcaacaagattgggaggaaattcaggtggaaca 19813194  T

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Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 228 - 296
Target Start/End: Complemental strand, 19819573 - 19819505
Alignment:
Q  228 agcagcaatattttgagcagctatcatacaatcatgggcagaaatttcagcaggaacatcatcacaaaa 296  Q
    |||| ||||||||||| ||||| ||| |||||||||  ||||| |||||  |||||||||| |||||||    
T  19819573 agcatcaatattttgatcagctctcaaacaatcatgaacagaattttcataaggaacatcaacacaaaa 19819505  T

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Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 228 - 296
Target Start/End: Complemental strand, 19839469 - 19839401
Alignment:
Q  228 agcagcaatattttgagcagctatcatacaatcatgggcagaaatttcagcaggaacatcatcacaaaa 296  Q
    |||| ||||||||||| ||||| ||| |||||||||  ||||| |||||  |||||||||| |||||||    
T  19839469 agcatcaatattttgatcagctctcaaacaatcatgaacagaattttcataaggaacatcaacacaaaa 19839401  T

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Target: chr1 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 308 - 392
Target Start/End: Complemental strand, 1718171 - 1718087
Alignment:
Q  308 taagaatgtcaacaagattgggaggaaatccaggtggaacaccaacatcattaatacttctgttagtttttccaacatgagctct 392  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||  |||| |||||| |||||| |||| ||||||    
T  1718171 taagagtgtcaacaagattgggaggaaatccaggtggaacaccaacatcattaccacttttgttagcttttcctacatcagctct 1718087  T

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Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 265 - 360
Target Start/End: Complemental strand, 38483915 - 38483820
Alignment:
Q  265 gcagaaatttcagcaggaacatcatcacaaaaattttgataattaagaatgtcaacaagattgggaggaaatccaggtggaacaccaacatcatta 360  Q
    |||||| |||||||||||||||||||||| || |||  | ||||| ||| |||||||||||  ||||||||| |||||||||||||||||||||||    
T  38483915 gcagaactttcagcaggaacatcatcacagaattttaaaaaattaggaaggtcaacaagatctggaggaaattcaggtggaacaccaacatcatta 38483820  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 305 - 373
Target Start/End: Original strand, 22685504 - 22685572
Alignment:
Q  305 aattaagaatgtcaacaagattgggaggaaatccaggtggaacaccaacatcattaatacttctgttag 373  Q
    |||||||  ||| ||||||||||  || ||||||||||||||||||||||||||||  |||||||||||    
T  22685504 aattaagtgtgttaacaagattgaaagaaaatccaggtggaacaccaacatcattaccacttctgttag 22685572  T

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Target: scaffold0038 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 317 - 356
Target Start/End: Original strand, 19562 - 19601
Alignment:
Q  317 caacaagattgggaggaaatccaggtggaacaccaacatc 356  Q
    |||||||| ||||||||||||||||| |||||||||||||    
T  19562 caacaagaatgggaggaaatccaggtagaacaccaacatc 19601  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 317 - 356
Target Start/End: Original strand, 28219064 - 28219103
Alignment:
Q  317 caacaagattgggaggaaatccaggtggaacaccaacatc 356  Q
    |||||||| ||||||||||||||||| |||||||||||||    
T  28219064 caacaagaatgggaggaaatccaggtagaacaccaacatc 28219103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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