View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13022_high_12 (Length: 435)
Name: NF13022_high_12
Description: NF13022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13022_high_12 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 360; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 14 - 420
Target Start/End: Original strand, 6803955 - 6804362
Alignment:
| Q |
14 |
atcaaaattagtttttatgcccgctttgctcaatatagatacagacactaaattataattcatatcagaaacatggagaacattacttaatgagaggatt |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
6803955 |
atcaaaattagtttttatgcccgctttgctcaatatagatacagacactaaattataattcatatcaggaacatggagaacattacttaatgagaggatt |
6804054 |
T |
|
| Q |
114 |
tttcctgaagtgagtttcaagttcacctttcctttaccaagaacagtggctgttct-gaatcactcaaaattatattttcctctccttcccctatatatt |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| || |||||||||||||||||||||||||| |
|
|
| T |
6804055 |
tttcctgaagtgagtttcaagttcacctttcctttaccaagaacagtggctgttcttgaatcactgaaaagtacattttcctctccttcccctatatatt |
6804154 |
T |
|
| Q |
213 |
tataggaggtgaacatatttttatttgcgcatatatgtgcggtgaccccagaatctaccacccatgatttttcctttataagaattatagtttcagaaac |
312 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| |
|
|
| T |
6804155 |
tataggaggtgaacatatttttatttgcacatatatgtgcggtgaccccagaatctaccacccatgagttttcctttataagaattatagattcagaaac |
6804254 |
T |
|
| Q |
313 |
aacattcacaaatatatcatccatcaaagctaaattaaatttaggattgacaggttggttgtttccattactgcatctatagtgagcaatacaaggtcct |
412 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
6804255 |
aacattcacaaatatataatccatcaaagctaaattaaatttaggattgacaggttggttgtttccattactgcatctatagtgagcaatgcaaggtcca |
6804354 |
T |
|
| Q |
413 |
tacttttg |
420 |
Q |
| |
|
|||||||| |
|
|
| T |
6804355 |
tacttttg |
6804362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 141 - 380
Target Start/End: Complemental strand, 14059839 - 14059596
Alignment:
| Q |
141 |
tttcctttaccaagaacagtggctgttct-gaatcactcaaaattatattttcctctccttcccctatatatttataggaggtgaacatatttttatttg |
239 |
Q |
| |
|
|||||| ||||||||||| ||||||| |||||||| ||||| |||| ||||| ||||| | ||||| |||||| || ||||||||||||||||||| |
|
|
| T |
14059839 |
tttcctataccaagaacatcaactgttctcgaatcacttaaaatgatatgttcctttcctttcgctatagttttataagatgtgaacatatttttatttg |
14059740 |
T |
|
| Q |
240 |
cgcatatatgtgcggtgaccccagaatctaccacccatgatttttcctttataagaattatagtttcagaaacaacattcacaaatatatcatccatcaa |
339 |
Q |
| |
|
| || ||||||| ||| | || |||| |||||||| ||||||||| || || ||| || | ||||||||||||||| ||||||||| |||| |
|
|
| T |
14059739 |
cacaaatatgtgaggtagaggctgagtctatcacccatggtttttccttcattgaaagtattgtatgggaaacaacattcacatgtatatcatctgtcaa |
14059640 |
T |
|
| Q |
340 |
agc---taaattaaatttaggattgacaggttggttgtttccat |
380 |
Q |
| |
|
| | |||||||||||||| || || || |||||||||||||| |
|
|
| T |
14059639 |
aacttgtaaattaaatttagaatcgatagcttggttgtttccat |
14059596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 33 - 99
Target Start/End: Complemental strand, 14059965 - 14059899
Alignment:
| Q |
33 |
cccgctttgctcaatatagatacagacactaaattataattcatatcagaaacatggagaacattac |
99 |
Q |
| |
|
|||||||||||||||||||| |||||||| ||||||||| |||||| || ||||| | |||||||| |
|
|
| T |
14059965 |
cccgctttgctcaatatagacacagacaccaaattataactcatatgaggcacatgtaaaacattac |
14059899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 33 - 333
Target Start/End: Original strand, 26972659 - 26972956
Alignment:
| Q |
33 |
cccgctttgctcaatatagatacagacactaaattataattcatatcagaaacatggagaacattacttaatgagaggatttttcctgaagtgagtttca |
132 |
Q |
| |
|
|||||||||||||||||||| ||| |||| ||||||||| |||||| || |||| | |||||||||||| || | | ||||||| || | ||||| | |
|
|
| T |
26972659 |
cccgctttgctcaatatagacacatacaccaaattataactcatatgaggcacatataaaacattacttaaagatatggtttttccagaggcaagtttta |
26972758 |
T |
|
| Q |
133 |
agttcacctttcctttaccaagaacagtggctgtt-ctgaatcactcaaaattatattttcctctccttcccctatatatttataggaggtgaacatatt |
231 |
Q |
| |
|
| | ||| |||||| ||||||||||| ||||| | |||||||| ||||| |||| ||||| ||||| | | |||||||| || ||||||||||| |
|
|
| T |
26972759 |
aatccacttttcctataccaagaacatcaactgttcccgaatcacttaaaatgatatgttcctttcctttcgc----tatttataagatgtgaacatatt |
26972854 |
T |
|
| Q |
232 |
tttatttgcgcatatatgtgcggtgaccccagaatctaccacccatgatttttcctttataagaattatagtttcagaaacaacattcacaaatatatca |
331 |
Q |
| |
|
||||||||| || ||||||| ||| || || |||| |||||||| ||||||||| || || ||| || | ||||| |||||||||| ||||||| |
|
|
| T |
26972855 |
tttatttgcacaaatatgtgaggtagagcctgagtctagcacccatggtttttccttcattgaaagtattgtatgagaaataacattcacatgtatatca |
26972954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 37 - 251
Target Start/End: Original strand, 53730522 - 53730737
Alignment:
| Q |
37 |
ctttgctcaatatagatacagacactaaattataattcatatcagaaacatggagaacattacttaatgagaggatttttcctgaagtgagtttcaagtt |
136 |
Q |
| |
|
|||||||||||||||| |||||||| ||||||||| |||||| || |||| | |||||||||||| || | | |||||| |||| |||| || | |
|
|
| T |
53730522 |
ctttgctcaatatagacacagacaccaaattataactcatatgaggcacatataaaacattacttaaagaaatggtttttctagaagcaggttttaaatc |
53730621 |
T |
|
| Q |
137 |
cacctttcctttaccaagaacagtggctgttctgaa-tcactcaaaattatattttcctctccttcccctatatatttataggaggtgaacatattttta |
235 |
Q |
| |
|
||| ||| || ||||||||||| |||||| || ||||| ||||| |||| |||| ||||| ||||||| |||||| || ||||||||||||||| |
|
|
| T |
53730622 |
cactttttctataccaagaacatcaattgttctcaaatcacttaaaatgatatgctcctttcctttccctatagttttataagatgtgaacatattttta |
53730721 |
T |
|
| Q |
236 |
tttgcgcatatatgtg |
251 |
Q |
| |
|
||||| || ||||||| |
|
|
| T |
53730722 |
tttgcacaaatatgtg |
53730737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 170 - 380
Target Start/End: Original strand, 21418264 - 21418477
Alignment:
| Q |
170 |
gaatcactcaaaattatattttcctctccttcccctatatatttataggaggtgaacatatttttatttgcgcatatatgtgcggtgaccccagaatcta |
269 |
Q |
| |
|
|||||||| ||||| |||| ||||| || || ||||||| |||||| || |||||||||||||||||||| || || |||| ||| | || |||| |
|
|
| T |
21418264 |
gaatcacttaaaatgatatgttcctttcttttccctatagttttataagatgtgaacatatttttatttgcacaaatttgtgaggtagaggctgagtcta |
21418363 |
T |
|
| Q |
270 |
ccacccatgatttttcctttataagaattatagtttcagaaacaacattcacaaatatatcatccatcaaagc---taaattaaatttaggattgacagg |
366 |
Q |
| |
|
||||||||| ||||||||| || || ||| || | |||||||||||||||| |||||||| ||||| | |||||||||||||| || || || |
|
|
| T |
21418364 |
ccacccatggtttttccttcattgaaagtattgtatgagaaacaacattcacatgtatatcatttgtcaaaacttgtaaattaaatttagaatcgatagc |
21418463 |
T |
|
| Q |
367 |
ttggttgtttccat |
380 |
Q |
| |
|
|||| ||||||||| |
|
|
| T |
21418464 |
ttggatgtttccat |
21418477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University