View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13022_high_13 (Length: 430)
Name: NF13022_high_13
Description: NF13022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13022_high_13 |
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Alignment Details
Target: chr3 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 17 - 410
Target Start/End: Original strand, 40157168 - 40157556
Alignment:
| Q |
17 |
tcagcgtgctaattagttcctcagtactgaccctacaaaacaattttccccgacgtgacaccaaacatggactaactgctacacatgtttgggtgcaaaa |
116 |
Q |
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| T |
40157168 |
tcagcgtgcttattagttcctcagtactgaccctacaaaacaattttccccgatgtgacaccaaacatggactaactgctacacatgcttgggtgcaaaa |
40157267 |
T |
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| Q |
117 |
aacttgtttcattgtatattcaattaacccgctcatttttactcctgaactatggactctgtgctagtagtagaatacttgcttggtacaggagcaataa |
216 |
Q |
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| T |
40157268 |
aacttgtttcattgtatattcaattaacccgctcatttttactcctgaactatggactctatgctagtagtagaatacttgcttggtacaggagcaataa |
40157367 |
T |
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| Q |
217 |
cagagtgttaaaaacttcaatgggtaaattcttcaaaagtgaattctacacaaatagtgcaattaacaacggactccaacatctttcnnnnnnnnnnnnn |
316 |
Q |
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| T |
40157368 |
cggagtgttaaaaacttccatgggtaaattcttcaaaagtgaattctacacaaatagtg-aattaacaacggactccaacatctttccaaaaaaaaaac- |
40157465 |
T |
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| Q |
317 |
nntgggctccaacgtgctgactatctattagttaaccctcataagcaaatccttctggcatgttacataaagcttgtattgtattgctgaccac |
410 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40157466 |
---gggctccaacgtgctgactatctattagttaaccctcttaagcaaatccttctggcatgttacataaagcttgtattgtattgctgaccac |
40157556 |
T |
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