View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13022_high_14 (Length: 423)
Name: NF13022_high_14
Description: NF13022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13022_high_14 |
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Alignment Details
Target: chr1 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 19 - 412
Target Start/End: Complemental strand, 41622953 - 41622560
Alignment:
| Q |
19 |
attcttcataacttgatctattctctcaagtttttcttcatccatttctaaaccaaaacacataacaacaagtatgcaaaaaacagcaaaccttgcatct |
118 |
Q |
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| T |
41622953 |
attcttcataacttgatctattctctcaagtttttcttcatccatttctaaaccaaaacacataacaacaagtatgcaaaaaacagcaaaccttgcatct |
41622854 |
T |
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| Q |
119 |
ctgacaacaataacaacgccattgttattctcagcattaactttaagcctattgatgagtttatccattgctttgtctctaacacttttaaactccttga |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41622853 |
ctgacaacaataacaacgccattgttattctcagcattaactttaagcctattgatgagtttatccattgctttgtctctaacacttttaaactccttga |
41622754 |
T |
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| Q |
219 |
gtctagttgaactcagcatgttctgaaccatgtttcttctcagtgatttccaaactggaccataaactgcagcattcacagtgaacttgttggcactgaa |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
41622753 |
gtctagttgaactcagcatgttctgaaccatgtttcttcttagtgatttccaaacaggaccataaactgcagcattcacagtgaacttgtttgcactgaa |
41622654 |
T |
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| Q |
319 |
tatgttccttgttggattctcaggtggtctagatgcatagagagcacctttttgaatgaaagcttcatgcacaagttttgcatctgtgatgatg |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41622653 |
tatgttccttgttggattctcaggtggtctagatgcatagagagcacccttttgaatgaaagcttcatgcacaagttttgcatctgtgatgatg |
41622560 |
T |
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