View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13022_high_18 (Length: 377)
Name: NF13022_high_18
Description: NF13022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13022_high_18 |
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Alignment Details
Target: chr3 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 1 - 356
Target Start/End: Complemental strand, 12404130 - 12403775
Alignment:
| Q |
1 |
agaatatccatagatacctcgcggttatagacttgagcaggaaaccagaagcggccagtttcgatagcaagataccagttcataacagaatcaacaggca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| |||||||||| |
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| T |
12404130 |
agaatatccatagatacctcgcggttatagacttgagcaggaaaccagaagcggccagtttcaattgcaagataccagttcataacagcttcaacaggca |
12404031 |
T |
|
| Q |
101 |
atgaactcctatgattgcagctatcatttccatcaccaacctttaatttcatcccttgaaaaggccaaagaagagagaaaattttcatccataacccact |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12404030 |
atgaactcctatgattgcagctatcatttccatcaccaacctttaatttcatcccttgaaaaggccaaagaagagagaaaattttcatccataacccact |
12403931 |
T |
|
| Q |
201 |
ttgtttgccatatttaagactcccaacacccctatttgaagcaacatgccatttccattccctataagcagcttgaccaataactccaccccatttcttc |
300 |
Q |
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||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12403930 |
ttgtttgccatgtttaagactcccaacacccatatttgaagcaacatgccatttccattccctataagcagcttgaccaataactccaccccatttcttc |
12403831 |
T |
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| Q |
301 |
ttcatgtgtctctcccaaaagtaatcactcacacatctctctctcaatgaatggca |
356 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
12403830 |
ttcatgtgtctctcccaaaagtaatcactcacacatctctccctcaatgaatggca |
12403775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 240 - 353
Target Start/End: Original strand, 38728887 - 38729000
Alignment:
| Q |
240 |
agcaacatgccatttccattccctataagcagcttgaccaataactccaccccatttcttcttcatgtgtctctcccaaaagtaatcactcacacatctc |
339 |
Q |
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||||||||||||||||||||||||||||||| | ||||||||||| ||||||||||| ||||||||||||||||||| || |||||||||||||||| |
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| T |
38728887 |
agcaacatgccatttccattccctataagcaacagaaccaataactctaccccatttctgtttcatgtgtctctcccaaaggtgatcactcacacatctc |
38728986 |
T |
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| Q |
340 |
tctctcaatgaatg |
353 |
Q |
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|| ||||| ||||| |
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| T |
38728987 |
tccctcaacgaatg |
38729000 |
T |
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