View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13022_high_20 (Length: 366)
Name: NF13022_high_20
Description: NF13022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13022_high_20 |
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Alignment Details
Target: chr5 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 24 - 347
Target Start/End: Complemental strand, 16097755 - 16097440
Alignment:
| Q |
24 |
ttctagacctatgatgggtgaatatgggttgactactaaccatgatcgacttagttatatcttccaacatgccaaccccgtagtttttgacatcaaagca |
123 |
Q |
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| T |
16097755 |
ttctagacctatgatgggtgaatatgggttgactactaaccattatcgacttagttatatcttccaac--------cctgtagtttttgacatcaaagca |
16097664 |
T |
|
| Q |
124 |
tatgtctaatgagggttgaaataaaactaatatggaggaagagatgcccaatgcatgccctcatgagcacctaagtaggttctatgaaacttgccaatac |
223 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
16097663 |
tatgtctaatgagggttgaaataaaactaatatggaggaagagatgcccaatgcatgccctcatgagcacctaagtaggttttatgaaacttgccaatac |
16097564 |
T |
|
| Q |
224 |
tatgtgccaccagccaatgtcactgaggaccaaaagaaacttaggcggtttgcttttacattaatagggagagccaaggaatggttattgtctctgccaa |
323 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16097563 |
tatgtgccaccagccaatgtcactgaggaccaaaagaaacttaggcggtttgcttttacattaatagggagagccaaggaatggttattgtctctgccaa |
16097464 |
T |
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| Q |
324 |
gtgtaaccatacagacttgagagg |
347 |
Q |
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|||||||||||||||||||||||| |
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| T |
16097463 |
gtgtaaccatacagacttgagagg |
16097440 |
T |
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