View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13022_high_21 (Length: 361)
Name: NF13022_high_21
Description: NF13022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13022_high_21 |
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Alignment Details
Target: chr4 (Bit Score: 138; Significance: 4e-72; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 199 - 344
Target Start/End: Complemental strand, 11593291 - 11593146
Alignment:
| Q |
199 |
tgatgaaccttttagctttgagtttgttcataacttcactaacaacagcaagcattttctctccaaatccaaaacaacaaccaaacacaatcgtcaaaga |
298 |
Q |
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| T |
11593291 |
tgatgaaccttttagctttgagtttgttcataacttcactaacaacagcaagcattttctctccaaatccaaaacaacaaccaaacacaattgtcaaaga |
11593192 |
T |
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| Q |
299 |
aggacacaaagttgttgttgttgaatatgatcaagatggttaccaa |
344 |
Q |
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| T |
11593191 |
aggtcacaaagttgttgttgttgaatatgatcaagatggttaccaa |
11593146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 199 - 344
Target Start/End: Original strand, 11644828 - 11644973
Alignment:
| Q |
199 |
tgatgaaccttttagctttgagtttgttcataacttcactaacaacagcaagcattttctctccaaatccaaaacaacaaccaaacacaatcgtcaaaga |
298 |
Q |
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| T |
11644828 |
tgatgaaccttttagctttgagtttgttcataacttcactaacaacagcaagcattttctctccaaatccaaaacaacaaccaaacacaattgtcaaaga |
11644927 |
T |
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| Q |
299 |
aggacacaaagttgttgttgttgaatatgatcaagatggttaccaa |
344 |
Q |
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| T |
11644928 |
aggtcacaaagttgttgttgttgaatatgatcaagatggttaccaa |
11644973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 75 - 110
Target Start/End: Original strand, 11644704 - 11644739
Alignment:
| Q |
75 |
ttgttacactcttcattcttaccacaacacaatcct |
110 |
Q |
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| T |
11644704 |
ttgttacactcttcattcttaccacaacacaatcct |
11644739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 199 - 265
Target Start/End: Complemental strand, 34705219 - 34705153
Alignment:
| Q |
199 |
tgatgaaccttttagctttgagtttgttcataacttcactaacaacagcaagcattttctctccaaa |
265 |
Q |
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|||||||| ||||||||||||| |||| |||||||||| ||| |||||||||||||||||||||| |
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| T |
34705219 |
tgatgaacattttagctttgagcctgttagtaacttcactcacagcagcaagcattttctctccaaa |
34705153 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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