View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13022_high_22 (Length: 353)
Name: NF13022_high_22
Description: NF13022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13022_high_22 |
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Alignment Details
Target: chr1 (Bit Score: 83; Significance: 3e-39; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 164 - 269
Target Start/End: Original strand, 44525506 - 44525616
Alignment:
| Q |
164 |
catctgaacaaaaaaccatgggtcaatccctatagt-----tcaggcataggttattatcgggagcattcctttgcagattaaattcacacattacgata |
258 |
Q |
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| T |
44525506 |
catctgaacaaaaaaccatgggtcaatctctatagtgtagttcaggcataggttattatcgggagcattcctttgcagattaaattcacacattacgata |
44525605 |
T |
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| Q |
259 |
agccaaactaa |
269 |
Q |
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|||||| |||| |
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| T |
44525606 |
agccaacctaa |
44525616 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 15 - 95
Target Start/End: Original strand, 44525358 - 44525438
Alignment:
| Q |
15 |
gaaatgaattatttgggtcccacttttttgcattatatcttgatccattttgtccttcatataagttccattcatcaagtt |
95 |
Q |
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| T |
44525358 |
gaaatgaattatttgggtcccacttttttgcattatatcttgatctattttgtccttcatataagttctattcaccaagtt |
44525438 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 299 - 337
Target Start/End: Original strand, 44525616 - 44525654
Alignment:
| Q |
299 |
acgtaataaagtttttccatagctccttagctacattac |
337 |
Q |
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| T |
44525616 |
acgtaataaagtttttccatagctccttagctacattac |
44525654 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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