View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13022_high_23 (Length: 324)

Name: NF13022_high_23
Description: NF13022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13022_high_23
NF13022_high_23
[»] chr2 (1 HSPs)
chr2 (12-308)||(4102888-4103184)


Alignment Details
Target: chr2 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 12 - 308
Target Start/End: Complemental strand, 4103184 - 4102888
Alignment:
Q  12 ttctatgatgttaactatgaaaagtacaatccaacaatgtatggtgattcatctagaggagtgaacaacaataataactggtacaacaataataataact 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4103184 ttctatgatgttaactatgaaaagtacaatccaacaatgtatggtgattcatctagaggagtgaacaacaataataactggtacaacaataataataact 4103085  T
Q  112 atggtaacaacaatgagtaccagaataaccatggcaactacaatggttacaagaaccaagaggagttgaaaaatgaacaacatgagtttgatgttgaacc 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4103084 atggtaacaacaatgagtaccagaataaccatggcaactacaatggttacaagaaccaagaggagttgaaaaatgaacaacatgagtttgatgttgaacc 4102985  T
Q  212 ataagaatttggttttatatcattagcaaagtgaagaattcgctttacttttgaagtgttctctgtgtgagtgtgttctatgtttcaatgtgctttg 308  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4102984 ataagaatttgattttatatcattagcaaagtgaagaattcgctttacttttgaagtgttctctgtgtgagtgtgttctatgtttcaatgtgctttg 4102888  T

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