View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13022_high_28 (Length: 250)
Name: NF13022_high_28
Description: NF13022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13022_high_28 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 9 - 250
Target Start/End: Complemental strand, 298365 - 298128
Alignment:
| Q |
9 |
gagatgaacataagtagtcataatgacatgtttctgaacacaatctcatcaatatcatcttcactaaccatcaataacagagtgtacaataataccggta |
108 |
Q |
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| T |
298365 |
gagaagaacataagtagtcataatgacatgtttctgaacacaatctcatcaatatcatcttcactaactatcaataacagagtgtacaataagaccggta |
298266 |
T |
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| Q |
109 |
ctagaagtaaatcagattgnnnnnnntaaataaataaaggaatcactatagagttgcaatcaccatggagaacttctggaaccaagaaatcaaaatcaaa |
208 |
Q |
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|||||||| | ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
298265 |
ctagaagtga----gattgaaaaaaataaataaaaaaaggaatcactatagagttgcaatcaccatggagaacttctggaaccaagaaatcaaaatcaaa |
298170 |
T |
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| Q |
209 |
tattttgagaaaagttttgttatcactaaaaatattttttct |
250 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
298169 |
tattttgagaaaagttttgttatcactaaaaatattttttct |
298128 |
T |
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