View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13022_high_29 (Length: 247)
Name: NF13022_high_29
Description: NF13022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13022_high_29 |
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| [»] chr6 (1 HSPs) |
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| [»] scaffold0008 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 19 - 243
Target Start/End: Original strand, 11797419 - 11797643
Alignment:
| Q |
19 |
cagaaaatccataatttgtcggcccatcgtaaaaacaagctgcaaaacttgcatatcatgaagcttgttcttccaaatgaagctattctcttgcattaac |
118 |
Q |
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| T |
11797419 |
cagaaaattcatagtttgtcggcccattgtaaaaacaagctgcaaaacttgcatatcatgaagcttgttcttccaaatgaagctattctcttgcattaac |
11797518 |
T |
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| Q |
119 |
gtagttcagttttaacggactactttaataacatagaactttgttgcactgacacttctgatcgaaagcgtgtctcagtatccaacacgtgttgtgtctg |
218 |
Q |
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| T |
11797519 |
gtagttcaattttaacggattactttaacaacatagaactttgttgcactgacacttctgatcgaaagcgtgtcccagtatccaacacgtgttatgtctg |
11797618 |
T |
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| Q |
219 |
acaccgacacaacagcgacacttgt |
243 |
Q |
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||| |||||||||| |||||||||| |
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| T |
11797619 |
acaacgacacaacaccgacacttgt |
11797643 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 203 - 247
Target Start/End: Original strand, 30982853 - 30982897
Alignment:
| Q |
203 |
acacgtgttgtgtctgacaccgacacaacagcgacacttgtaatt |
247 |
Q |
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| T |
30982853 |
acacgtgtcgtgtctgacaccgacacgacaccgacacttataatt |
30982897 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 203 - 247
Target Start/End: Complemental strand, 16766781 - 16766737
Alignment:
| Q |
203 |
acacgtgttgtgtctgacaccgacacaacagcgacacttgtaatt |
247 |
Q |
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| T |
16766781 |
acacgtgttgtgtccgacaccgacacgacaccgacacttgtaatt |
16766737 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0008
Description:
Target: scaffold0008; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 186 - 247
Target Start/End: Original strand, 263330 - 263391
Alignment:
| Q |
186 |
gcgtgtctcagtatccaacacgtgttgtgtctgacaccgacacaacagcgacacttgtaatt |
247 |
Q |
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| T |
263330 |
gcgtgtcttggtatcgaacacgtgtcgtgtctgacaccgacacgacactgacacttataatt |
263391 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 203 - 247
Target Start/End: Complemental strand, 21542114 - 21542070
Alignment:
| Q |
203 |
acacgtgttgtgtctgacaccgacacaacagcgacacttgtaatt |
247 |
Q |
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|||||||| ||||| ||||||||||| ||| |||||||||||||| |
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| T |
21542114 |
acacgtgtcgtgtccgacaccgacacgacaccgacacttgtaatt |
21542070 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 203 - 247
Target Start/End: Original strand, 17005594 - 17005638
Alignment:
| Q |
203 |
acacgtgttgtgtctgacaccgacacaacagcgacacttgtaatt |
247 |
Q |
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| T |
17005594 |
acacgtgttatgtctgacaccaacacaacaccgacacttataatt |
17005638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 203 - 247
Target Start/End: Original strand, 34337156 - 34337200
Alignment:
| Q |
203 |
acacgtgttgtgtctgacaccgacacaacagcgacacttgtaatt |
247 |
Q |
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|||||||||||||| |||||||||| ||| |||||||||||||| |
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| T |
34337156 |
acacgtgttgtgtccgacaccgacaggacaccgacacttgtaatt |
34337200 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 207 - 247
Target Start/End: Original strand, 31694689 - 31694729
Alignment:
| Q |
207 |
gtgttgtgtctgacaccgacacaacagcgacacttgtaatt |
247 |
Q |
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|||||||||| ||||||||||| ||| |||||||||||||| |
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| T |
31694689 |
gtgttgtgtccgacaccgacacgacaccgacacttgtaatt |
31694729 |
T |
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