View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13022_high_30 (Length: 240)
Name: NF13022_high_30
Description: NF13022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13022_high_30 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 38569280 - 38569058
Alignment:
| Q |
18 |
caggaaacccgcctcgaatatcgaaccactctgtcataaaccggttcgctgggtgagtctcctgaaccggaacgttacaaccaaaatcactcagcaaagg |
117 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38569280 |
caggaaacccacctcgaatatcgaaccactctgtcataaaccggttcgctgggtgagtctcctgaaccggaacgttacaaccaaaatcactcagcaaagg |
38569181 |
T |
|
| Q |
118 |
acaacccgaaccagaaacagaaccagcaccagctaaaacacgaagctgtggaggttggcttgaacccgggttaacactccacgtcagcaacggttgtttg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38569180 |
acaacccgaaccagaaacagaaccagcaccagctaaaacacgaagctgtggaggttggcttgaacccgggttaacactccacgtcagcaacggttgtttg |
38569081 |
T |
|
| Q |
218 |
ttgttattgccgttagataaaac |
240 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
38569080 |
ttgttattgccgttagataaaac |
38569058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University