View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13022_high_6 (Length: 603)
Name: NF13022_high_6
Description: NF13022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13022_high_6 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 436; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 16 - 514
Target Start/End: Complemental strand, 11625969 - 11625471
Alignment:
| Q |
16 |
acagagaacccttgttagacttttagcccgttactactctcgattaagagactgaatta-tcaaggaaattacactcgatgaaataataaaattatcttt |
114 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11625969 |
acagagaacccttgttagacttttagccagttactactctcgattaagagagtgaattaatcaaggaaattacactcgatgaaataataaaattatcttt |
11625870 |
T |
|
| Q |
115 |
gatggtaaagatacaaaagtcaccatcaaaaatctttgtagcatcagatctccaacagatgcactgacggtgcatctagttggtgcctgactcatggttt |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
11625869 |
gatggtaaagatacaaaagtcaccatcaaaaatctttgtcgcatcagatctccaacagatgcactgacggtgcatctagttgttgcctgactcatggttt |
11625770 |
T |
|
| Q |
215 |
caagcttttggttacatgggagttgagggaaagtacgtgagtatttgctcaaaatgtgaaaggagcagcttttgtaaccctacgtgagaaagagagagta |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| ||||| ||| |
|
|
| T |
11625769 |
caagcttttggttacatgggagttgagggaaagtacgtgagtatttgctcaaaatgtgaaaggagcagtttttgtaaccctaagtgagaatgagagggta |
11625670 |
T |
|
| Q |
315 |
tatataggagagtgaacgtgagtgattgaatgtgtgaggttgttgtgatgatactgaatgagtcaatatatttagtggatgagaaaaatgaggatttgca |
414 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11625669 |
tatataggaaagtgaacgtgagtgattgaatgtgtga-gaggttgtgatgatactgaatgagtcaatatatttagtggatgagaaaaatgaggatttgca |
11625571 |
T |
|
| Q |
415 |
tgatatggcagttgagaatattatggaaaacaaatctccaagcgaatcacatgtagaatgaaaataaaatttgaaaccatacaagaggtaaaaacaaatt |
514 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11625570 |
tgatatggcagttgagaatattatggaaaacaaatctccaagtgaatcacatgtagaatgaaaataaaatttgaaaccatacaagaggtaaaaacaaatt |
11625471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 535 - 592
Target Start/End: Complemental strand, 11624606 - 11624549
Alignment:
| Q |
535 |
gtagtcaattaaacacttttacttagtaaaaacaaaaataaccgactaatctgatgat |
592 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
11624606 |
gtagtcaattaaacacttttacttagtaaaaacaaaaataaccgactaatccgatgat |
11624549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 115 - 219
Target Start/End: Complemental strand, 31050051 - 31049947
Alignment:
| Q |
115 |
gatggtaaagatacaaaagtcaccatcaaaaatctttgtagcatcagatctccaacagatgcactgacggtgcatctagttggtgcctgactcatggttt |
214 |
Q |
| |
|
||||||||||||| | ||||||||||||| | |||||| | |||||||||||||||||||||| | | | | ||||||||| || |||||||| |||| |
|
|
| T |
31050051 |
gatggtaaagatatagaagtcaccatcaacattctttgaatcatcagatctccaacagatgcattaatagagaatctagttgttgtttgactcatcgttt |
31049952 |
T |
|
| Q |
215 |
caagc |
219 |
Q |
| |
|
||||| |
|
|
| T |
31049951 |
caagc |
31049947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 115 - 179
Target Start/End: Complemental strand, 31040035 - 31039971
Alignment:
| Q |
115 |
gatggtaaagatacaaaagtcaccatcaaaaatctttgtagcatcagatctccaacagatgcact |
179 |
Q |
| |
|
||||||||| ||| | ||||||||||||| | |||||| | |||||||||||||||||||||||| |
|
|
| T |
31040035 |
gatggtaaacatatagaagtcaccatcaacattctttgaatcatcagatctccaacagatgcact |
31039971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 74 - 110
Target Start/End: Original strand, 21185285 - 21185321
Alignment:
| Q |
74 |
atcaaggaaattacactcgatgaaataataaaattat |
110 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
21185285 |
atcaaggaaatcacactcgatgaaataataaaattat |
21185321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 121 - 181
Target Start/End: Complemental strand, 31046195 - 31046135
Alignment:
| Q |
121 |
aaagatacaaaagtcaccatcaaaaatctttgtagcatcagatctccaacagatgcactga |
181 |
Q |
| |
|
||||||| | ||||||| |||||| || ||||||||||||||||| ||||| ||||||||| |
|
|
| T |
31046195 |
aaagatatagaagtcacaatcaaagatatttgtagcatcagatctacaacatatgcactga |
31046135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 127 - 171
Target Start/End: Complemental strand, 31015639 - 31015595
Alignment:
| Q |
127 |
acaaaagtcaccatcaaaaatctttgtagcatcagatctccaaca |
171 |
Q |
| |
|
|||||||||||| ||| |||||||||||||||||||||||||| |
|
|
| T |
31015639 |
acaaaagtcaccttcatcgatctttgtagcatcagatctccaaca |
31015595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 74 - 104
Target Start/End: Original strand, 50968789 - 50968819
Alignment:
| Q |
74 |
atcaaggaaattacactcgatgaaataataa |
104 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
50968789 |
atcaaggaaattacactcgatgaaataataa |
50968819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 74 - 104
Target Start/End: Original strand, 50970901 - 50970931
Alignment:
| Q |
74 |
atcaaggaaattacactcgatgaaataataa |
104 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
50970901 |
atcaaggaaattacactcgatgaaataataa |
50970931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University