View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13022_high_8 (Length: 535)
Name: NF13022_high_8
Description: NF13022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13022_high_8 |
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Alignment Details
Target: chr6 (Bit Score: 380; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 8 - 518
Target Start/End: Original strand, 4041968 - 4042479
Alignment:
| Q |
8 |
tgagatgaatgataccaaaaactaaataaattacatgggtttatgaaatatatatttttaagcatagattatcttatttctcaaaaacaaatagagtgtt |
107 |
Q |
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| T |
4041968 |
tgagatgaatgataccaaaaactaaataaattatatgggtttatgaaatatatatttttaagcatagattatcttatttctcaaaaacaaatagagtgtt |
4042067 |
T |
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| Q |
108 |
ccgttaagatattgaaaaaacctaacttctacgtaaaatagagatgagtcttaaatgtaggatcagtgttcctcatcgtaaaatctctcttatttattgc |
207 |
Q |
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| T |
4042068 |
ccgttacgatattgaaaaaacctaacttctacgtaaaatagagacgagtcttaaacgtaggatcaatgttcctcatcgtaaaatctctcttatttattac |
4042167 |
T |
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| Q |
208 |
ttattgtattttgggcaccttcgcgagagagccactgtcacaccaccgtggatgagtttcaaacaccattttcagtcatatttgaagtgcgaagttaaag |
307 |
Q |
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| T |
4042168 |
ttattgtattttgggcaccttcacgagagagtcactgtaacaccaccgtaggtgaatttcaaacaccattttcagtcctatttgaagtacgaagttaaag |
4042267 |
T |
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| Q |
308 |
gtgtttaaatcattttcatttcacaaaataactctcagatatgaagatttttatggaatctttttaattttnnnnnnnnnntgtcagttcacttttaaat |
407 |
Q |
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| T |
4042268 |
gtgtttaaattattttcatttcacaaaataactttcagatatgaagatttttatggaacctatttaatttataaaaaaaaatgtca-ttcacttttaaat |
4042366 |
T |
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| Q |
408 |
ccaaagtttctctgaagttctgtactttttatggttttgattaagccctattccaaaagtaccttaatta--acatttcaagttacacaattttgccaag |
505 |
Q |
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| T |
4042367 |
ccaaagtttctctgaagttctatactttttatggttttgattaagccctattccaaaagtaccttaattaacacatttcaagttacacaattttgctaag |
4042466 |
T |
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| Q |
506 |
ttaaactggtttt |
518 |
Q |
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| T |
4042467 |
ttaaactggtttt |
4042479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 392 - 450
Target Start/End: Complemental strand, 4118507 - 4118448
Alignment:
| Q |
392 |
cagttcacttttaaatccaaagtttctctgaagttctgtac-tttttatggttttgatta |
450 |
Q |
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| T |
4118507 |
cagttcacttttaaatccaaatttcctccgaagttctatacatttttatggttttgatta |
4118448 |
T |
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