View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13022_low_10 (Length: 460)
Name: NF13022_low_10
Description: NF13022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13022_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 209 - 442
Target Start/End: Complemental strand, 39947362 - 39947129
Alignment:
| Q |
209 |
gtggtcaatggcattaacacgtatgttgttgaaatggacaaggcctatggttgagttggagcaataattgaaggacatagattctgttttttcaagttga |
308 |
Q |
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| T |
39947362 |
gtggtcaatggcattaacacgtatgttgttgaaatggacaaggcctatggttgagttggagcaataattgaaggacatagattctgttttttcaagttga |
39947263 |
T |
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| Q |
309 |
aacaaatactcaatatgttccttttcttcatacttggaattgttaatattttcattgtgatcatttttgtgcataaggaggaaagtgtggtcttcttcac |
408 |
Q |
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| T |
39947262 |
aacaaatactcaatatgttccttttcttcatacttggaattgttaatattttcattgtgatcattgttgtgcataaggaggaaagtgtggtcttcttcac |
39947163 |
T |
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| Q |
409 |
acaaaaggaaagatgtgtccattaattttcttcc |
442 |
Q |
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| T |
39947162 |
acaaaaggaaagatgtgtccattaattttcttcc |
39947129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 8 - 157
Target Start/End: Complemental strand, 39947566 - 39947417
Alignment:
| Q |
8 |
tgagatgaagggacatagttacatggatgtgtatgtgttgcttcaaaagaaactgatcaaagtatgtcactgataaataagctgtgcatagcttgaatcc |
107 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39947566 |
tgagttgaagggacatagttacatggatgtgtatgtgttgcttcaaaagaaactgatcaaagtatgtcactgataaataagctgtgcatagcttgaatcc |
39947467 |
T |
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| Q |
108 |
aagtttttcccttgtctgattcaaaagatttagaacttccattaattagc |
157 |
Q |
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| T |
39947466 |
aagtttttcccttgtctgattcaaaagattataaactttcattaattagc |
39947417 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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