View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13022_low_11 (Length: 460)
Name: NF13022_low_11
Description: NF13022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13022_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 413; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 13 - 441
Target Start/End: Complemental strand, 7023852 - 7023424
Alignment:
| Q |
13 |
aatatattcttttcatgataatcaagattagtgtacatcaatctagatacatcatggacagttctagtctgccctattttcatattccttgctaggcttt |
112 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
7023852 |
aatatattcttttcatgataatcaagattagtgtacatcaatctagatacatcatggacagttctagtctgccctattttgatattccttgctaggcttt |
7023753 |
T |
|
| Q |
113 |
cccatatggctttatctttcccacaaagatacttagctaaagttgtaagaacttgtggaacaccttcagcaagatcgaccatcctctccgatagctcacg |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7023752 |
cccatatggctttatctttcccacaaagatacttacctaaagttgtaagaacttgtggaacaccttcagcaagatcgaccatcctctccgatagctcacg |
7023653 |
T |
|
| Q |
213 |
gtactccatttcattatgcttatgtttagcaaaggcatgcaaattgaaaagcagaagtgattcaacagagtccaatggttgaacctcgtatgtatcattt |
312 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
7023652 |
gtactccatttcattatgcttatgtttagcaaaggcatgcaaattgaaaagcagaagtgattcaacagagtccaatggttgaaccttgtatgtatcattt |
7023553 |
T |
|
| Q |
313 |
gtttttccaacaagtacttccctaactcccgtagttattatgattcgacttcctggtccaaaccaatcaagtgttccaaccaaaacttctaattgctctg |
412 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7023552 |
gtttttccaacaagtacttccgtaactcccgtagttattatgattcgacttcctggtccaaaccaatcaagtgttccaaccaaaacttctaattgctctg |
7023453 |
T |
|
| Q |
413 |
catctttgacatcatcaagaacaataaga |
441 |
Q |
| |
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||||||||||||||||||||||||||||| |
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| T |
7023452 |
catctttgacatcatcaagaacaataaga |
7023424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 13 - 441
Target Start/End: Complemental strand, 7031241 - 7030813
Alignment:
| Q |
13 |
aatatattcttttcatgataatcaagattagtgtacatcaatctagatacatcatggacagttctagtctgccctattttcatattccttgctaggcttt |
112 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| ||||||||| ||||| |||||||| || | ||||| ||||||||| | || |||| |||||| |
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| T |
7031241 |
aatatattcttttcatgagaatcaagattagtgtatatcaatctaaatacaacatggacattttcaatctgctctattttcagaatctttgcctggcttt |
7031142 |
T |
|
| Q |
113 |
cccatatggctttatctttcccacaaagatacttagctaaagttgtaagaacttgtggaacaccttcagcaagatcgaccatcctctccgatagctcacg |
212 |
Q |
| |
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|||||||| | |||||||||||||||||| |||||||||| | |||||||| ||||||||||| | | | |||||||||| ||| ||||||||| |
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| T |
7031141 |
cccatatgtccttatctttcccacaaagaaggttagctaaagctttaagaactagtggaacacctgcggtataatcgaccatcttctttgatagctcata |
7031042 |
T |
|
| Q |
213 |
gtactccatttcattatgcttatgtttagcaaaggcatgcaaattgaaaagcagaagtgattcaacagagtccaatggttgaacctcgtatgtatcattt |
312 |
Q |
| |
|
|||||||||||| ||||| |||||||| |||||| ||||||||||||||| ||| |||||| ||||||||||||| | |||||||||| |||||| |
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| T |
7031041 |
gtactccatttcgagatgctcatgtttagtaaaggcgtgcaaattgaaaagctgaaaagattcagcagagtccaatggctcaacctcgtatatatcatca |
7030942 |
T |
|
| Q |
313 |
gtttttccaacaagtacttccctaactcccgtagttattatgattcgacttcctggtccaaaccaatcaagtgttccaaccaaaacttctaattgctctg |
412 |
Q |
| |
|
||||||| ||||||||| | || ||| |||||||| ||||||| ||||| |||||| |||||||||| |||||||| ||||||||||| |||||||| |
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| T |
7030941 |
acttttccagcaagtacttgcttatctctagtagttatgatgattctacttcttggtcctaaccaatcaactgttccaatcaaaacttctagttgctctg |
7030842 |
T |
|
| Q |
413 |
catctttgacatcatcaagaacaataaga |
441 |
Q |
| |
|
||||||||| ||| ||||||||||||||| |
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|
| T |
7030841 |
catctttgatatcgtcaagaacaataaga |
7030813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 4 - 441
Target Start/End: Complemental strand, 7036959 - 7036522
Alignment:
| Q |
4 |
atgtcgaagaatatattcttttcatgataatcaagattagtgtacatcaatctagatacatcatggacagttctagtctgccctattttcatattccttg |
103 |
Q |
| |
|
||||| ||||||||| ||||||||| |||||||||||||||||| ||||||||| | |||||||||||| || | ||||| ||||||| | |||||||| |
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|
| T |
7036959 |
atgtctaagaatataatcttttcataataatcaagattagtgtatatcaatctaaaaacatcatggacattttcaatctgctctattttaagattccttg |
7036860 |
T |
|
| Q |
104 |
ctaggctttcccatatggctttatctttcccacaaagatacttagctaaagttgtaagaacttgtggaacaccttcagcaagatcgaccatcctctccga |
203 |
Q |
| |
|
| || ||||||||||||||||||||||||||| |||| |||||||||| | ||||||| ||||||||||| | | | ||| ||||| ||| || |
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|
| T |
7036859 |
attgggtttcccatatggctttatctttcccacgaagaaggttagctaaagctttaagaaccagtggaacacctgcggtataatcaaccatattctttga |
7036760 |
T |
|
| Q |
204 |
tagctcacggtactccatttcattatgcttatgtttagcaaaggcatgcaaattgaaaagcagaagtgattcaacagagtccaatggttgaacctcgtat |
303 |
Q |
| |
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||||| | |||||||||||| ||||| |||||||| |||||| | |||||||||||| ||| |||||| ||||||||||||| | |||||||||| |
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|
| T |
7036759 |
tagctaatagtactccatttcgagatgctcatgtttagtaaaggcgtaaaaattgaaaagctgaaaagattcagcagagtccaatggctcaacctcgtat |
7036660 |
T |
|
| Q |
304 |
gtatcatttgtttttccaacaagtacttccctaactcccgtagttattatgattcgacttcctggtccaaaccaatcaagtgttccaaccaaaacttcta |
403 |
Q |
| |
|
|||||| ||||||| ||||||||| || ||| |||||||| ||||||| |||||||||||| |||||||||| | |||||| ||||||||||| |
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|
| T |
7036659 |
atatcatcaaattttccagcaagtacttgtttatctctagtagttatgatgattctacttcctggtcctaaccaatcaactattccaatcaaaacttcta |
7036560 |
T |
|
| Q |
404 |
attgctctgcatctttgacatcatcaagaacaataaga |
441 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||| |
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| T |
7036559 |
gttgctctgcatctttaacatcatcaagaacaataaga |
7036522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 4 - 441
Target Start/End: Original strand, 7075003 - 7075440
Alignment:
| Q |
4 |
atgtcgaagaatatattcttttcatgataatcaagattagtgtacatcaatctagatacatcatggacagttctagtctgccctattttcatattccttg |
103 |
Q |
| |
|
||||| |||||||| ||||||||| |||||||||||||||||| ||||||||| | ||||| |||||| || | ||||| ||||||| | |||||||| |
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|
| T |
7075003 |
atgtctaagaatatgatcttttcataataatcaagattagtgtatatcaatctaaaaacatcgtggacattttcaatctgctctattttaagattccttg |
7075102 |
T |
|
| Q |
104 |
ctaggctttcccatatggctttatctttcccacaaagatacttagctaaagttgtaagaacttgtggaacaccttcagcaagatcgaccatcctctccga |
203 |
Q |
| |
|
| |||||||||||||||||||||||||||||| |||| |||||||||| | ||||||| ||||||||||| | | | ||| ||||| ||| || |
|
|
| T |
7075103 |
attggctttcccatatggctttatctttcccacgaagaaggttagctaaagctttaagaaccagtggaacacctgcggtataatccaccattttctttga |
7075202 |
T |
|
| Q |
204 |
tagctcacggtactccatttcattatgcttatgtttagcaaaggcatgcaaattgaaaagcagaagtgattcaacagagtccaatggttgaacctcgtat |
303 |
Q |
| |
|
||||| | ||||||||||||| |||||| |||||| |||||||||||| ||||||||| ||| |||||| ||||||||||||| | ||| || ||| |
|
|
| T |
7075203 |
tagcttatagtactccatttcaagatgcttttgtttattaaaggcatgcaagttgaaaagctgaaaagattcagcagagtccaatggctcaacttcatat |
7075302 |
T |
|
| Q |
304 |
gtatcatttgtttttccaacaagtacttccctaactcccgtagttattatgattcgacttcctggtccaaaccaatcaagtgttccaaccaaaacttcta |
403 |
Q |
| |
|
|||||| ||||||| |||||||| || ||| | |||||| ||||||| |||||||||||| |||||||||| |||||||||||||||||||| |
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|
| T |
7075303 |
atatcatcaacttttccagaaagtacttgtttatctctagcagttatgatgattctacttcctggtcctaaccaatcaactgttccaaccaaaacttcta |
7075402 |
T |
|
| Q |
404 |
attgctctgcatctttgacatcatcaagaacaataaga |
441 |
Q |
| |
|
||| || |||||||||||||||||||||||||||||| |
|
|
| T |
7075403 |
gttgttccgcatctttgacatcatcaagaacaataaga |
7075440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 352 - 441
Target Start/End: Original strand, 7081406 - 7081495
Alignment:
| Q |
352 |
atgattcgacttcctggtccaaaccaatcaagtgttccaaccaaaacttctaattgctctgcatctttgacatcatcaagaacaataaga |
441 |
Q |
| |
|
||||||| ||| |||| ||||||||||||||||||||||| |||| ||||||||| | || ||| |||||||| |||||||||| |||| |
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|
| T |
7081406 |
atgattctactacctgttccaaaccaatcaagtgttccaattaaaatttctaattgttgtggatccttgacatcgtcaagaacaacaaga |
7081495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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