View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13022_low_13 (Length: 433)
Name: NF13022_low_13
Description: NF13022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13022_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 391; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 1 - 423
Target Start/End: Original strand, 36094080 - 36094501
Alignment:
| Q |
1 |
taaagtaatgggacatacaataagaaagtgtgtgtttgaaagaatgttcaaaagaacgtgttgttatcattcctcttaaccaggaacacaactaataaaa |
100 |
Q |
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| T |
36094080 |
taaagtaatgggacatacaataagaaagtgtgtgtttgaaagaatgttcaaaagaacgtgttgttagcattcctcttaaccaggaacacaactaataaaa |
36094179 |
T |
|
| Q |
101 |
tactcctgttggtgtagtgtagaggtttaacacacaaccactcaaccaagaactgcagtttgattcacagtctatgctcttgagcaaaatgaacatggat |
200 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| ||||| |
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| T |
36094180 |
tactcctgttggtgtagtatagaggtttaacacacaaccactcaaccaagaactgcaatttgattcacagtctatgctcttgagcaaactgaacgtggat |
36094279 |
T |
|
| Q |
201 |
ataattcatagctaaaccagtcatatcacacatttgatttggtttgaagtttaaccaatgcaaaggactacaacacaaaacaagagacgagtctgactat |
300 |
Q |
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|||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36094280 |
ataattcatagctaaaccagtcatatcacacattcgattt-gtttgaagtttaaccaatgcaaaggactacaacacaaaacaagagacgagtctgactat |
36094378 |
T |
|
| Q |
301 |
gcaatcaactcaatgtaggataatagcatgtcatattggacttctagtttgacttgaaacacttctcttttactttcaatcatcttttaagattcaaaat |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36094379 |
gcaatcaactcaatgtaggataatagcatgtcatattggacttctagtttgacttgaaacacttctcttttactttcaatcatcttttaagattcaaaat |
36094478 |
T |
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| Q |
401 |
catgtctgtcaatttggcctttg |
423 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
36094479 |
catgtctgtcaatttggcctttg |
36094501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 45554687 - 45554740
Alignment:
| Q |
18 |
caataagaaagtgtgtgtttgaaagaatgttcaaaagaacgtgttgttatcatt |
71 |
Q |
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||||||||||||| || || || ||||||||||||||| |||||||||||||| |
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| T |
45554687 |
caataagaaagtgagtattagagagaatgttcaaaagagagtgttgttatcatt |
45554740 |
T |
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