View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13022_low_2 (Length: 706)
Name: NF13022_low_2
Description: NF13022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13022_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 632; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 632; E-Value: 0
Query Start/End: Original strand, 19 - 694
Target Start/End: Complemental strand, 37215514 - 37214838
Alignment:
| Q |
19 |
cctgcaaaagcgaaagccttggttttaatcaaggaacatgaactatatccttaacaaaataaggttctagaaacatattctatttctattatttgaaatt |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37215514 |
cctgcaaaagcgaaagccttggttttaatcaaggaacatgaactatatccttaacaaaataaggttctagaaacatattctatttctattatttgaaatt |
37215415 |
T |
|
| Q |
119 |
caaatgcatcttactcaaatcatgtgaatctcaca-aaatttgatataacctatatgaattttaactagtacaagagtgtgtgttgggaagagcatttct |
217 |
Q |
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||||||| |||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37215414 |
caaatgcgtcttactcaaatcatgtggatctcacataaatttgatataacctatatgaattttaactagtacaagagtgtgtgttgggaagagcatttct |
37215315 |
T |
|
| Q |
218 |
aaattaaatttatatggttataggcctaccatgtaatacatcatgcaaagaacccaaacttgcatattgataaaccaaaattctgttgtctgcttctaga |
317 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37215314 |
aaattaaatttatatggttataggcctaccgtgtaatacatcatgcaaagaacccaaacttgcatattgataaaccaaaattctgttgtctgcttctaga |
37215215 |
T |
|
| Q |
318 |
caatatcccgtcaactctacaaaattgtcatgcttgagtcttgaaacaactgataactgcaaaatccatatagtaacatgataaaatatgagtgacaaca |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37215214 |
caatatcccgtcaactctacaaaattgtcatgcttgagtcttgaaacaactgataactgcaaaatccatatagtaacatgataaaatatgagtgacaaca |
37215115 |
T |
|
| Q |
418 |
caaagagccaaatcattgctttaaatannnnnnncttacctgagccgcgaaatcgttggagtcggaatcaggtgaagaacttgtatccagccttttgatt |
517 |
Q |
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| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37215114 |
ccaagagccaaatcattgctttaaataattttttcttacctgagccgcgaaatcgttggagtcggaatcaggtgaagaacttgtatccagccttttgatt |
37215015 |
T |
|
| Q |
518 |
gcagcttcagtaccatcattcatttttgcatagtaaacccttccatacgaaccttcaccaatgaaggcctttgaaccaaagtttcctgttaatctattta |
617 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37215014 |
gcagcttcagtaccatcattcatttttgcatagtaaacccttccatacgaaccttcaccaatgaaggcctttgaaccaaagtttcctgttaatctattta |
37214915 |
T |
|
| Q |
618 |
actcagccaatgatatcgagggtatctcaattggtaatactttctgtggaccaccactcttggtaatgttgctcctt |
694 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37214914 |
actcagccaatgatatcgagggtatctcaattggtaatactttctgtggaccaccactcttggtaatgttgctcctt |
37214838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 261 - 376
Target Start/End: Complemental strand, 23408668 - 23408553
Alignment:
| Q |
261 |
tgcaaagaacccaaacttgcatattgataaaccaaaattctgttgtctgcttctagacaatatcccgtcaactctacaaaattgtcatgcttgagtcttg |
360 |
Q |
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||||| ||||| | |||||||||||| ||||||||||||||||| | ||| || ||| |||||||| ||||| | ||||| | |||| ||| ||||||| |
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| T |
23408668 |
tgcaacgaaccaagacttgcatattggtaaaccaaaattctgttatttgcctcaagagaatatcccatcaaccccacaaagtgttcattcttcagtcttg |
23408569 |
T |
|
| Q |
361 |
aaacaactgataactg |
376 |
Q |
| |
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|||||| || |||||| |
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| T |
23408568 |
aaacaattgctaactg |
23408553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 637 - 694
Target Start/End: Complemental strand, 23408274 - 23408217
Alignment:
| Q |
637 |
gggtatctcaattggtaatactttctgtggaccaccactcttggtaatgttgctcctt |
694 |
Q |
| |
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|||| |||||||| |||| ||||||| ||||||||||||||| |||| ||||||||| |
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| T |
23408274 |
gggtgtctcaatttctaatgctttctgcggaccaccactcttgataatattgctcctt |
23408217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 543 - 600
Target Start/End: Complemental strand, 52717148 - 52717091
Alignment:
| Q |
543 |
ttgcatagtaaacccttccatacgaaccttcaccaatgaaggcctttgaaccaaagtt |
600 |
Q |
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||||||| || ||||| |||||||| ||||||||||| || |||||||| |||||||| |
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| T |
52717148 |
ttgcataatacaccctcccatacgacccttcaccaatcaatgcctttgatccaaagtt |
52717091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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