View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13022_low_20 (Length: 370)
Name: NF13022_low_20
Description: NF13022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13022_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 1 - 347
Target Start/End: Original strand, 4103161 - 4103507
Alignment:
| Q |
1 |
cttttcatagttaacatcatagaaatattttccaccttccaaaaatcttgtgtcactcatcccttgtttctcaccattgtacctgttattctgagcatta |
100 |
Q |
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| T |
4103161 |
cttttcatagttaacatcatagaaatattttccaccttccaaaaatcttgtgtcactcatcccttgtttctcaccattgtacctgttattctgagcatta |
4103260 |
T |
|
| Q |
101 |
taattattataattattgttgtggaatgatctttcatttgcagcattgttgttgttgaagtaatactcttggttgttgttttgtttttccatcatggagt |
200 |
Q |
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| T |
4103261 |
taattattataattattgctgtggaatgatctttcatttgcagcattgttgttgttgaagtaatactcttggttgttgttttgtttttccatcatggagt |
4103360 |
T |
|
| Q |
201 |
tgtaaccttcttcattgtattttgtgtcactcaactcattttggttatttccaaaagtgtctttgttgtaatactttgtgttatatgcatcattgttgta |
300 |
Q |
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| T |
4103361 |
tgtaaccttcttcattgtattttgtgtcactcaactcattttggttatttccaaaagtgtctttgttgtaatactttgtgttatatgcatcattgttgta |
4103460 |
T |
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| Q |
301 |
gtacttgtttttgttggggtaattgcttgtctcttcaaagttagaat |
347 |
Q |
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| T |
4103461 |
gtacttgttattgttggggtaattgcttgtctcttcaaagttagaat |
4103507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 9 - 80
Target Start/End: Complemental strand, 34999950 - 34999879
Alignment:
| Q |
9 |
agttaacatcatagaaatattttccaccttccaaaaatcttgtgtcactcatcccttgtttctcaccattgt |
80 |
Q |
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||||||||||||| ||||||||||||||||||| || ||| ||||||||||| ||||| |||||||||||| |
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| T |
34999950 |
agttaacatcataaaaatattttccaccttccataactctcgtgtcactcattccttgcctctcaccattgt |
34999879 |
T |
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