View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13022_low_28 (Length: 253)
Name: NF13022_low_28
Description: NF13022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13022_low_28 |
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| [»] scaffold0031 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 91 - 204
Target Start/End: Complemental strand, 12655271 - 12655159
Alignment:
| Q |
91 |
atgtgcctaagctaataacaaacttgatcacacatttttctgcataattatgcagaaagtcaagaggtacccgaaatccgtagataagcctaatgatcac |
190 |
Q |
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| T |
12655271 |
atgtgcctgagctaataacaaacttgttaacacatttttctgcataatgatgcaaaaaatcaag-cgtactgaaagttcttagataagcctaatgatcac |
12655173 |
T |
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| Q |
191 |
cttcatttgattcc |
204 |
Q |
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| T |
12655172 |
cttcatttgattcc |
12655159 |
T |
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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 92 - 148
Target Start/End: Original strand, 12418720 - 12418778
Alignment:
| Q |
92 |
tgtgcctaagctaataacaaacttgatcacac--atttttctgcataattatgcagaaa |
148 |
Q |
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| T |
12418720 |
tgtgcctaagctaataacgaacttgttcacacaaatatttcttcataattatgcagaaa |
12418778 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 90 - 149
Target Start/End: Original strand, 15329060 - 15329119
Alignment:
| Q |
90 |
catgtgcctaagctaataacaaacttgatcacacatttttctgcataattatgcagaaag |
149 |
Q |
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| T |
15329060 |
catgtgactaagctaataacaaacttgatcacacatttttctacataattatgcagaaag |
15329119 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 15329001 - 15329041
Alignment:
| Q |
1 |
cttagctattaagactttttcttaatacttttgcatccttc |
41 |
Q |
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| T |
15329001 |
cttagctattaagactctttcttaatacttttgcttccttc |
15329041 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0031 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0031
Description:
Target: scaffold0031; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 119 - 202
Target Start/End: Original strand, 80184 - 80267
Alignment:
| Q |
119 |
cacacatttttctgcataattatgcagaaagtcaagaggtacccgaaatccgtagataagcctaatgatcaccttcatttgatt |
202 |
Q |
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| T |
80184 |
cacatatttttctgcataattatgcagaaaattcagaggtaccaaaagtccttagataatccaaatgatcaccttcatttgatt |
80267 |
T |
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