View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13022_low_3 (Length: 703)

Name: NF13022_low_3
Description: NF13022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13022_low_3
NF13022_low_3
[»] chr7 (5 HSPs)
chr7 (1-206)||(34995333-34995540)
chr7 (242-324)||(34995546-34995628)
chr7 (289-345)||(34994917-34994973)
chr7 (305-345)||(4181037-4181077)
chr7 (283-345)||(11698124-11698186)
[»] chr5 (6 HSPs)
chr5 (285-345)||(14394683-14394743)
chr5 (283-345)||(34064852-34064914)
chr5 (305-345)||(36423201-36423241)
chr5 (251-345)||(40705538-40705632)
chr5 (284-340)||(10143127-10143183)
chr5 (305-341)||(31569583-31569619)
[»] chr8 (3 HSPs)
chr8 (250-345)||(30959263-30959358)
chr8 (283-358)||(8826431-8826506)
chr8 (305-345)||(1283361-1283401)
[»] chr4 (6 HSPs)
chr4 (308-345)||(50464305-50464342)
chr4 (283-345)||(56459725-56459787)
chr4 (336-365)||(29099425-29099454)
chr4 (284-341)||(35318331-35318388)
chr4 (284-345)||(52305839-52305900)
chr4 (303-343)||(31907682-31907722)
[»] chr1 (1 HSPs)
chr1 (283-345)||(19402356-19402418)


Alignment Details
Target: chr7 (Bit Score: 105; Significance: 4e-52; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 34995333 - 34995540
Alignment:
Q  1 tgaggcggcgagatcagatctatttcacgttattcgtcctcttttgttttagttttattttgttacaaatgaagagatcccgttcacgtttcacattttt 100  Q
    ||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| ||||| ||||||||||||| ||||||||| ||    
T  34995333 tgaggcggcgagatcagatctatttcacgttcttggtcctcttttgttttagttttattttgttacagatgaacagatcccgttcacatttcacattatt 34995432  T
Q  101 catgaaaattgctttaaaataacaaaacacactaaaggcataactagataaattggtagatggca--gattgattcttctacatacaagtgatgaagatg 198  Q
    ||||||||||||||||||||||||||||| ||  |||  || || |  |   |    ||||| ||  |||||||||||||||||||||||||||||||||    
T  34995433 catgaaaattgctttaaaataacaaaacaaacacaagtgatgacaatctttttattcagatgacatagattgattcttctacatacaagtgatgaagatg 34995532  T
Q  199 aaaagata 206  Q
    ||||||||    
T  34995533 aaaagata 34995540  T

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Target: chr7; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 242 - 324
Target Start/End: Original strand, 34995546 - 34995628
Alignment:
Q  242 gttagataaaaataatacaataagggaatgcacatggtttgttttttaatcttgaccatctaattttaatctaatgattgata 324  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34995546 gttagataaaaataatacaataagggaatacacatggtttgttttttaatcttgaccatctaattttaatctaatgattgata 34995628  T

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Target: chr7; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 289 - 345
Target Start/End: Complemental strand, 34994973 - 34994917
Alignment:
Q  289 aatcttgaccatctaattttaatctaatgattgataattattctcaccattctcata 345  Q
    ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||    
T  34994973 aatcttgaccatctaattttaatctaatgattgctagttattctcaccattctcata 34994917  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 305 - 345
Target Start/End: Original strand, 4181037 - 4181077
Alignment:
Q  305 ttttaatctaatgattgataattattctcaccattctcata 345  Q
    |||||||| |||| |||||||||||||||||||||||||||    
T  4181037 ttttaatcaaatggttgataattattctcaccattctcata 4181077  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 283 - 345
Target Start/End: Original strand, 11698124 - 11698186
Alignment:
Q  283 ttttttaatcttgaccatctaattttaatctaatgattgataattattctcaccattctcata 345  Q
    |||||||||||  ||||| || |||| |||||||||||||| || ||||||| ||||||||||    
T  11698124 ttttttaatctcaaccatttatttttgatctaatgattgatgatcattctcaacattctcata 11698186  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 285 - 345
Target Start/End: Complemental strand, 14394743 - 14394683
Alignment:
Q  285 ttttaatcttgaccatctaattttaatctaatgattgataattattctcaccattctcata 345  Q
    |||||||||  |||||||| |||| ||||||||||||||||||||| ||||||||||||||    
T  14394743 ttttaatctcaaccatctattttttatctaatgattgataattattatcaccattctcata 14394683  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 283 - 345
Target Start/End: Original strand, 34064852 - 34064914
Alignment:
Q  283 ttttttaatcttgaccatctaattttaatctaatgattgataattattctcaccattctcata 345  Q
    ||||||||||| |||||| || ||||||||||| | ||||||| | |||||||||||||||||    
T  34064852 ttttttaatctagaccatttatttttaatctaaaggttgataagtgttctcaccattctcata 34064914  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 305 - 345
Target Start/End: Complemental strand, 36423241 - 36423201
Alignment:
Q  305 ttttaatctaatgattgataattattctcaccattctcata 345  Q
    ||||||||| |||||||||||||||||||| ||||||||||    
T  36423241 ttttaatctgatgattgataattattctcatcattctcata 36423201  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 251 - 345
Target Start/End: Complemental strand, 40705632 - 40705538
Alignment:
Q  251 aaataatacaataagggaatgcacatggtttgttttttaatcttgaccatctaattttaatctaatgattgataattattctcaccattctcata 345  Q
    ||||||||  ||||||| |||| ||||  |||||||||||||    ||||||||  ||||||||| | || |||| |||||||||||||||||||    
T  40705632 aaataataggataaggggatgcccatgtattgttttttaatcacagccatctaaaattaatctaagggttaataactattctcaccattctcata 40705538  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 284 - 340
Target Start/End: Original strand, 10143127 - 10143183
Alignment:
Q  284 tttttaatcttgaccatctaattttaatctaatgattgataattattctcaccattc 340  Q
    ||||||||||  |||||||| ||||||||||||  ||||||||||||| || |||||    
T  10143127 tttttaatctcaaccatctatttttaatctaatagttgataattattcccatcattc 10143183  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 305 - 341
Target Start/End: Original strand, 31569583 - 31569619
Alignment:
Q  305 ttttaatctaatgattgataattattctcaccattct 341  Q
    |||||||||||||||||||||||||| ||| ||||||    
T  31569583 ttttaatctaatgattgataattattttcatcattct 31569619  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 250 - 345
Target Start/End: Original strand, 30959263 - 30959358
Alignment:
Q  250 aaaataatacaataagggaatgcacatggtttgttttttaatcttgaccatctaattttaatctaatgattgataattattctcaccattctcata 345  Q
    |||||||||||||||| | |||||||||  |||||||||||||   ||||| |||  ||||||||| |  ||||||||||||||| ||||||||||    
T  30959263 aaaataatacaataagaggatgcacatgtgttgttttttaatcacaaccatttaaagttaatctaaagggtgataattattctcatcattctcata 30959358  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 283 - 358
Target Start/End: Original strand, 8826431 - 8826506
Alignment:
Q  283 ttttttaatcttgaccatctaattttaatctaatgattgataattattctcaccattctcataagatatgtcctct 358  Q
    ||||| |||||  |||||||| || |||| ||||| ||||||| ||||||||||||||||||| ||||| ||||||    
T  8826431 tttttaaatctcaaccatctatttgtaatttaatggttgataactattctcaccattctcatatgatatttcctct 8826506  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 305 - 345
Target Start/End: Complemental strand, 1283401 - 1283361
Alignment:
Q  305 ttttaatctaatgattgataattattctcaccattctcata 345  Q
    |||| ||||||||||||||||||||||||| ||||||||||    
T  1283401 tttttatctaatgattgataattattctcatcattctcata 1283361  T

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Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 308 - 345
Target Start/End: Original strand, 50464305 - 50464342
Alignment:
Q  308 taatctaatgattgataattattctcaccattctcata 345  Q
    |||||||||| |||||||||||||||||||||||||||    
T  50464305 taatctaatggttgataattattctcaccattctcata 50464342  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 283 - 345
Target Start/End: Original strand, 56459725 - 56459787
Alignment:
Q  283 ttttttaatcttgaccatctaattttaatctaatgattgataattattctcaccattctcata 345  Q
    |||| |||||| |||||| || ||||||||||| | ||||||| | |||||||||||||||||    
T  56459725 ttttgtaatctggaccatttatttttaatctaaaggttgataagtgttctcaccattctcata 56459787  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 336 - 365
Target Start/End: Complemental strand, 29099454 - 29099425
Alignment:
Q  336 cattctcataagatatgtcctctatatata 365  Q
    ||||||||||||||||||||||||||||||    
T  29099454 cattctcataagatatgtcctctatatata 29099425  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 284 - 341
Target Start/End: Original strand, 35318331 - 35318388
Alignment:
Q  284 tttttaatcttgaccatctaattttaatctaatgattgataattattctcaccattct 341  Q
    ||||||||||  ||||| || ||||||||||||| ||||| || ||||||||||||||    
T  35318331 tttttaatctcaaccatttatttttaatctaatggttgatgatcattctcaccattct 35318388  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 284 - 345
Target Start/End: Complemental strand, 52305900 - 52305839
Alignment:
Q  284 tttttaatcttgaccatctaattttaatctaatgattgataattattctcaccattctcata 345  Q
    ||||||||||  ||||| || ||||||||||||| ||||| || ||||||| ||||||||||    
T  52305900 tttttaatctcaaccatttatttttaatctaatggttgatgatcattctcatcattctcata 52305839  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 303 - 343
Target Start/End: Original strand, 31907682 - 31907722
Alignment:
Q  303 aattttaatctaatgattgataattattctcaccattctca 343  Q
    ||||||||||||| | |||||||| ||||||||||||||||    
T  31907682 aattttaatctaagggttgataatcattctcaccattctca 31907722  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 283 - 345
Target Start/End: Complemental strand, 19402418 - 19402356
Alignment:
Q  283 ttttttaatcttgaccatctaattttaatctaatgattgataattattctcaccattctcata 345  Q
    |||| |||||| |||||| || ||||||||||| | ||||||| | |||||||||||||||||    
T  19402418 ttttgtaatctggaccatttatttttaatctaaaggttgataagtgttctcaccattctcata 19402356  T

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