View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13022_low_4 (Length: 675)
Name: NF13022_low_4
Description: NF13022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13022_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 575; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 575; E-Value: 0
Query Start/End: Original strand, 16 - 663
Target Start/End: Complemental strand, 17377186 - 17376539
Alignment:
| Q |
16 |
cagttcagaatattgaggttttgaggaagcttggtgtgcttcaatcttccatttctctactggtatccaattttcccaatgtagcattcgccaggcattc |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17377186 |
cagttcagaatattgaggttttgaggaagcttggtgtgcttcaaggttccatttctctactggtatccaattttcccaatgtagcattcgccaggcattc |
17377087 |
T |
|
| Q |
116 |
tagatttgttaaggctgttaattcagtcaaagaaatggggtttgatcctttgatgtcttattttgttttggcagttgaagtaattgcaaagatgaacaaa |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
17377086 |
tagatttgttaaggctgttaattcagtcaaagaaatggggtttgatcctttgatgtcttattttgttttggcagttcaagtaattgcaaagatgaacaaa |
17376987 |
T |
|
| Q |
216 |
gagaattgggaatcaaaaatcaagatttttgcaaggtggggttggtcgagagatatgtgtcttttagctttccaaaaacagcctcattgtatgatgttgt |
315 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17376986 |
gagaattgggaatcaaaaatcaagatttttgagaggtggggttggtcgagagatatgtgtcttttagctttccaaaaacagcctcattgtatgatgttgt |
17376887 |
T |
|
| Q |
316 |
cagnnnnnnngattatgaagacaatgaacttcttgatgaacgatgtgggtcttccaccacaagacattgtaggaagccctgctgttccgtaccgtaactt |
415 |
Q |
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||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| |
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| T |
17376886 |
cagaaaaaaagattatgaaaacaatgaacttcttgatgaacgatgtgggtcttccaccacaagacattgtaggaagccctgctgttctgttccgtaactt |
17376787 |
T |
|
| Q |
416 |
ggagaagacacttattcctagatgtacagttattaagattttgaagtcaacgggtttgataaagagtggtttgcgcataagtacctttatttgcataact |
515 |
Q |
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| T |
17376786 |
ggagaagacacttattcctagatgtacagttattaagattttgaagtcaacgggtttgataaagagtggtttgcgcataagtacctttatttgcataact |
17376687 |
T |
|
| Q |
516 |
gagaaaacatttttggggcgatatgtgaacccatttcggaaagatttaccattgttattggatgcatataaaggtcagaattcagattgatcatctcgat |
615 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |
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| T |
17376686 |
gagaaaacatttttggggcgatatgtgaccccatttcggaaagatttaccattgttattggatgcatataaaggtcagaattcagattgattatcttgat |
17376587 |
T |
|
| Q |
616 |
ttgcataagtgcctttactggattttagccctgaatcattagtatatt |
663 |
Q |
| |
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||||||||||||||||||||| |||||||| ||||||||||||||||| |
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| T |
17376586 |
ttgcataagtgcctttactggtttttagccttgaatcattagtatatt |
17376539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 175 - 311
Target Start/End: Complemental strand, 17374273 - 17374138
Alignment:
| Q |
175 |
attttgttttggcagttgaagtaattgcaaagatgaacaaagagaattgggaatcaaaaatcaagatttttgcaaggtggggttggtcgagagatatgtg |
274 |
Q |
| |
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|||||||||||||| || |||||||||||| | ||||||| ||||| ||||||||| | | |||||||| | | |||| ||||||||| |||| || |
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| T |
17374273 |
attttgttttggcacttcaagtaattgcaagtgtagacaaaga-aattgtgaatcaaaatttaggatttttgagaagcggggctggtcgagacatatctg |
17374175 |
T |
|
| Q |
275 |
tcttttagctttccaaaaacagcctcattgtatgatg |
311 |
Q |
| |
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||||| ||||||||||||||||| | ||||||||| |
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| T |
17374174 |
tctttcggctttccaaaaacagcccgagtgtatgatg |
17374138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 155; Significance: 6e-82; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 155; E-Value: 6e-82
Query Start/End: Original strand, 18 - 609
Target Start/End: Original strand, 1114615 - 1115206
Alignment:
| Q |
18 |
gttcagaatattgaggttttgaggaagcttggtgtgcttcaatcttccatttctctactggtatccaattttcccaatgtagcattcgccaggcattcta |
117 |
Q |
| |
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|||| ||| |||||||||||||||||||||||||| | |||| ||| ||||| |||||||||||||||| |||||||||| ||| |||||||| |
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| T |
1114615 |
gttccgaacattgaggttttgaggaagcttggtgtacctcaaagttctatttccagtttggtatccaattttccttgtgtagcattcaccaagcattcta |
1114714 |
T |
|
| Q |
118 |
gatttgttaaggctgttaattcagtcaaagaaatggggtttgatcctttgatgtcttattttgttttggcagttgaagtaattgcaaagatgaacaaaga |
217 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||||||||||||| || || |||||||||||||| || ||| |||| || ||| ||||||| |
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| T |
1114715 |
gatttgttgaggctgttaattcagtcaaagaaatggggtttgatccttcgaagttgtattttgttttggcgattcgagtgattgtaagtatggacaaaga |
1114814 |
T |
|
| Q |
218 |
gaattgggaatcaaaaatcaagatttttgcaaggtggggttggtcgagagatatgtgtcttttagctttccaaaaacagcctcattgtatgatgttgtca |
317 |
Q |
| |
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| ||||||||||||| | |||||||| | | |||||| ||||| |||||||| |||| ||| ||||||| ||| | ||| | | | ||||| | ||| |
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| T |
1114815 |
aatttgggaatcaaaatttaagattttcgagaagtggggctggtcaagagatatttgtcgtttcgctttcctaaagtatcctgagtatgtgatgatctca |
1114914 |
T |
|
| Q |
318 |
gnnnnnnngattatgaagacaatgaacttcttgatgaacgatgtgggtcttccaccacaagacattgtaggaagccctgctgttccgtaccgtaacttgg |
417 |
Q |
| |
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| |||||||| |||||| |||||||| |||| |||||||||||| ||||| ||||||||| | |||||| ||| | ||| ||||||| |
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| T |
1114915 |
gagaaaaaaattatgaaaacaatggacttcttggtgaaggatgtgggtcttgcaccagaagacattgctacatgccctgggattctgacccgcaacttgg |
1115014 |
T |
|
| Q |
418 |
agaagacacttattcctagatgtacagttattaagattttgaagtcaacgggtttgataaagagtggtttgcgcataagtacctttatttgcataactga |
517 |
Q |
| |
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||||||||||| | |||| |||| | ||||| |||||||||||||||| ||||| |||||||||||||||| |||||||||||||| | || ||| |
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| T |
1115015 |
agaagacacttgtccctaaatgtgctgttatcaagattttgaagtcaagaggtttagtaaagagtggtttgcgtgtaagtacctttattatgacaagtga |
1115114 |
T |
|
| Q |
518 |
gaaaacatttttggggcgatatgtgaacccatttcggaaagatttaccattgttattggatgcatataaaggtcagaattcagattgatcat |
609 |
Q |
| |
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| ||| ||| || | |||||||| |||||||| ||||||||| ||||||||||| ||||||||||||| |||||| ||||||||||||| |
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| T |
1115115 |
ggaaaagtttgtgcagaaatatgtgaccccatttcagaaagatttgccattgttattagatgcatataaagttcagaaatcagattgatcat |
1115206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000009; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 627 - 663
Target Start/End: Original strand, 15328700 - 15328736
Alignment:
| Q |
627 |
cctttactggattttagccctgaatcattagtatatt |
663 |
Q |
| |
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|||||||||| ||||||||||||||| |||||||||| |
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| T |
15328700 |
cctttactggtttttagccctgaatcgttagtatatt |
15328736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 627 - 663
Target Start/End: Original strand, 15509069 - 15509105
Alignment:
| Q |
627 |
cctttactggattttagccctgaatcattagtatatt |
663 |
Q |
| |
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|||||||||| ||||||||||||||| |||||||||| |
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| T |
15509069 |
cctttactggtttttagccctgaatcgttagtatatt |
15509105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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