View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13022_low_5 (Length: 661)

Name: NF13022_low_5
Description: NF13022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13022_low_5
NF13022_low_5
[»] chr6 (3 HSPs)
chr6 (257-656)||(7384066-7384465)
chr6 (19-182)||(7383827-7383990)
chr6 (265-301)||(6293451-6293487)
[»] chr3 (2 HSPs)
chr3 (265-303)||(31337617-31337655)
chr3 (265-321)||(42026575-42026631)
[»] chr1 (1 HSPs)
chr1 (263-300)||(17028863-17028900)
[»] chr8 (1 HSPs)
chr8 (265-301)||(11733934-11733970)
[»] chr4 (3 HSPs)
chr4 (265-301)||(29209234-29209270)
chr4 (265-301)||(42639079-42639115)
chr4 (264-300)||(56248328-56248364)


Alignment Details
Target: chr6 (Bit Score: 340; Significance: 0; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 257 - 656
Target Start/End: Original strand, 7384066 - 7384465
Alignment:
Q  257 cgtcaataagtttgatagaaatatggtatttgatagagcattatgactctctttgattcatttagagaacaatcaaatctcatcttatttagtaggataa 356  Q
    ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||| |||| ||||||||||| ||||||    
T  7384066 cgtcaatgagtttgatagaaatatgatatttgatagagcattatgactctctttgattcatctaaagaacaatcaagtctcgtcttatttagtgggataa 7384165  T
Q  357 ggcttaactattcttgtttctacttattgatagggtaacttttgatgcagttactagacccatgatttggagggtccgtaaaagtgcagttattagtatc 456  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  7384166 gacttaactattcttgtttctacttattgatagggtaacttttgatgcagttactagacctatgatttggagggtccgtaaaagtgcagttattagtatc 7384265  T
Q  457 ataaataacgccattcagccattgcttgagattattcaaaaaattagacttaagaactatgaatacaaagatacattgttagcacttagcactatgaaga 556  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| ||||||    
T  7384266 ataaataacgccattcagccattgcttgagactattcaaaaaattagacttaagaactatgaatgcagagatacattgttagcacttagcactgtgaaga 7384365  T
Q  557 agtttttgctttaggattacaaggtttttcttccgtactgttttctatttttaaccaataatatatgttttttatctcttgaattcaggttcatctcact 656  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  7384366 agtttttgctttaggattacaaggtttttcttccatactgttttctatttttaaccaataatatatgttttttatctcttgaattcaggttcatatcact 7384465  T

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Target: chr6; HSP #2
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 19 - 182
Target Start/End: Original strand, 7383827 - 7383990
Alignment:
Q  19 aatatcgcattcaagaaattattaatttatcaggacacaaaataggtaaacttttagtgttgttttaactaaaatcttacaactaccataatttccctca 118  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7383827 aatatcacattcaagaaattattaatttatcaggacacaaaataggtaaacttttagtgttgttttaactaaaatcttacaactaccataatttccctca 7383926  T
Q  119 aatgatttcttactataannnnnnnacaatgtagtaaaggatagtgaatcatataaaggcgagt 182  Q
    ||||||||||||||||||       |||||||||||||||||||||||||||||||||| ||||    
T  7383927 aatgatttcttactataattttcttacaatgtagtaaaggatagtgaatcatataaaggggagt 7383990  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 265 - 301
Target Start/End: Complemental strand, 6293487 - 6293451
Alignment:
Q  265 agtttgatagaaatatggtatttgatagagcattatg 301  Q
    |||| |||||||||||||||| |||||||||||||||    
T  6293487 agttagatagaaatatggtatatgatagagcattatg 6293451  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 265 - 303
Target Start/End: Complemental strand, 31337655 - 31337617
Alignment:
Q  265 agtttgatagaaatatggtatttgatagagcattatgac 303  Q
    |||| |||||||||||||||||||||||| |||||||||    
T  31337655 agttggatagaaatatggtatttgatagaacattatgac 31337617  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 265 - 321
Target Start/End: Complemental strand, 42026631 - 42026575
Alignment:
Q  265 agtttgatagaaatatggtatttgatagagcattatgactctctttgattcatttag 321  Q
    |||| |||||||||||||||| ||||||| ||||||| |  | ||||||||||||||    
T  42026631 agttagatagaaatatggtatatgatagaacattatggcgttatttgattcatttag 42026575  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 263 - 300
Target Start/End: Original strand, 17028863 - 17028900
Alignment:
Q  263 taagtttgatagaaatatggtatttgatagagcattat 300  Q
    |||||| |||||||||||||||||||||||| ||||||    
T  17028863 taagttagatagaaatatggtatttgatagaacattat 17028900  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 265 - 301
Target Start/End: Original strand, 11733934 - 11733970
Alignment:
Q  265 agtttgatagaaatatggtatttgatagagcattatg 301  Q
    |||| |||||||||||||||| |||||||||||||||    
T  11733934 agttagatagaaatatggtatgtgatagagcattatg 11733970  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000009; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 265 - 301
Target Start/End: Complemental strand, 29209270 - 29209234
Alignment:
Q  265 agtttgatagaaatatggtatttgatagagcattatg 301  Q
    |||| |||||||||||||||| |||||||||||||||    
T  29209270 agttggatagaaatatggtatatgatagagcattatg 29209234  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 265 - 301
Target Start/End: Complemental strand, 42639115 - 42639079
Alignment:
Q  265 agtttgatagaaatatggtatttgatagagcattatg 301  Q
    |||| |||||||||||||||||||||||| |||||||    
T  42639115 agttggatagaaatatggtatttgatagaacattatg 42639079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 264 - 300
Target Start/End: Complemental strand, 56248364 - 56248328
Alignment:
Q  264 aagtttgatagaaatatggtatttgatagagcattat 300  Q
    ||||| |||||||||||||||||||||||| ||||||    
T  56248364 aagttagatagaaatatggtatttgatagaacattat 56248328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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