View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13022_low_9 (Length: 463)
Name: NF13022_low_9
Description: NF13022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13022_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 353; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 17 - 453
Target Start/End: Original strand, 3290207 - 3290653
Alignment:
| Q |
17 |
aaaaccaatactaatggctatttatatagtgatggcacgaaacccttttctttccccttttttcaacttcctcatcaccacctcaacaaagcacatactt |
116 |
Q |
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| T |
3290207 |
aaaaccaatactaatggctatttatatagtgatggcacgaaacccttttctttccccttttttcaatttcctcatcaccacctcaacaaagcacatactt |
3290306 |
T |
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| Q |
117 |
tgagctagattggaccaacaaaaagaaaaggaacaagattggataatccatcaatattagaatttcctttttatgtcacgcaagccagtcaaattggtac |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3290307 |
tgagctagattggaccaacaaaaagaaaaggaacaagattggataatccagcaatattagaatttcctttttatgtcacgcaagccagtcaaattggtac |
3290406 |
T |
|
| Q |
217 |
aacatgctttcaaaggtaatattacaaattccttttgatgtcagcaatttaagttggtatgatacgttttttccttagatttttggtgactgtaatacca |
316 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3290407 |
aacatgctttcaaaggtaatattaaaaattccttttgatgtcagcaatttaagttggtatgatacgttttttccttagatttttggtgactgtaatacca |
3290506 |
T |
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| Q |
317 |
cgtattcacatgggttcttgacttacttgtcaagttactttggataaatatatnnnnnnnnntgaatgtttcaaaaccctaagacctact---------- |
406 |
Q |
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| T |
3290507 |
cgtattcacatgggttcttgacttacttgtcaagttactttggataaatataaaaaaaaaaaaaaatgttttaaaaccctaagacctacttgtgactgta |
3290606 |
T |
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| Q |
407 |
ataccacgtagacatgcttgtgaagtcacttccctcattatcctttg |
453 |
Q |
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| T |
3290607 |
ataccacgtagacatgcttgtgaagtcacttccctcatcatcctttg |
3290653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 32 - 166
Target Start/End: Original strand, 3296154 - 3296289
Alignment:
| Q |
32 |
ggctatttatatagtgatggcacgaaacccttttctttccccttttttcaacttcctcatcaccacctcaacaaagcacatactttgagctagattggac |
131 |
Q |
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| T |
3296154 |
ggctatttatatagttatggctcgaaccacttgcctttcccttttttcaaatttcctcatcaccacctcagcaaagcacatactttgagctatatatgac |
3296253 |
T |
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| Q |
132 |
caacaaaaagaaaagg-aacaagattggataatcca |
166 |
Q |
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| T |
3296254 |
caagaaaataaaaaggaaaaaagattggataatcca |
3296289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 32 - 126
Target Start/End: Original strand, 3257156 - 3257249
Alignment:
| Q |
32 |
ggctatttatatagtgatggcacgaaacccttttctttccccttttttcaacttcctcatcaccacctcaacaaagcacatactttgagctagat |
126 |
Q |
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| T |
3257156 |
ggctatttatatagtgatggcatgaaccacttttctttccc-ttttttcagtttcctcatcaccacctcagcaatgcatatactttgagctagat |
3257249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 32 - 145
Target Start/End: Original strand, 3280290 - 3280402
Alignment:
| Q |
32 |
ggctatttatatagtgatggcacgaaacccttttctttccccttttttcaacttcctcatcaccacctcaacaaagcacatactttgagctagattggac |
131 |
Q |
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|||||||||||||||||||||| ||| | | ||||||||||||||| || |||||||||||||||||| ||| ||| ||||||| |||||||| ||| |
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| T |
3280290 |
ggctatttatatagtgatggcatgaaccacctttctttccccttttc-cagtttcctcatcaccacctcagcaatgcatatactttcagctagataggat |
3280388 |
T |
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| Q |
132 |
caacaaaaagaaaa |
145 |
Q |
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||| |||||||||| |
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| T |
3280389 |
caagaaaaagaaaa |
3280402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 98 - 194
Target Start/End: Original strand, 3288208 - 3288304
Alignment:
| Q |
98 |
ctcaacaaagcacatactttgagctagattggaccaacaaaaagaaaagg-aacaagattggataatccatcaatattagaatttcctttttatgtca |
194 |
Q |
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|||| ||||||||||||||||| ||| || ||||||| ||||||||||| |||||||||| |||||||| ||| |||| || |||||||| |||||| |
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| T |
3288208 |
ctcagcaaagcacatactttgaactacataggaccaa-gaaaagaaaaggcaacaagattgaataatccaacaacattaaaaattccttttgatgtca |
3288304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 237 - 331
Target Start/End: Original strand, 3288282 - 3288379
Alignment:
| Q |
237 |
attacaaattccttttgatgtcagcaatttaagttggtatgatacgttttttcctt---agatttttggtgactgtaataccacgtattcacatgggt |
331 |
Q |
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|||| ||||||||||||||||||||| || || ||||||||||| |||||| || ||||| | |||||||||||||||||| |||||||||| |
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| T |
3288282 |
attaaaaattccttttgatgtcagcagttcaaattggtatgatatgtttttcttttaaaagattcctagtgactgtaataccacgttgtcacatgggt |
3288379 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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