View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13023_high_1 (Length: 481)

Name: NF13023_high_1
Description: NF13023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13023_high_1
NF13023_high_1
[»] chr6 (17 HSPs)
chr6 (1-464)||(2952106-2952566)
chr6 (1-464)||(2937633-2938090)
chr6 (3-464)||(2927333-2927788)
chr6 (1-464)||(3003232-3003689)
chr6 (1-464)||(2996821-2997278)
chr6 (1-464)||(2934772-2935229)
chr6 (1-464)||(2974180-2974637)
chr6 (1-464)||(2929482-2929939)
chr6 (74-464)||(2964682-2965066)
chr6 (1-462)||(2983038-2983496)
chr6 (149-464)||(2658578-2658896)
chr6 (333-464)||(2978420-2978550)
chr6 (149-336)||(2979192-2979373)
chr6 (371-423)||(2954555-2954607)
chr6 (226-270)||(2985695-2985739)
chr6 (1-67)||(2965091-2965157)
chr6 (60-134)||(2979376-2979450)
[»] scaffold0024 (2 HSPs)
scaffold0024 (1-464)||(34690-35147)
scaffold0024 (157-423)||(44532-44795)
[»] chr7 (1 HSPs)
chr7 (1-464)||(3339198-3339655)
[»] chr3 (2 HSPs)
chr3 (1-464)||(49613609-49614066)
chr3 (1-464)||(49618597-49619041)


Alignment Details
Target: chr6 (Bit Score: 318; Significance: 1e-179; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 464
Target Start/End: Complemental strand, 2952566 - 2952106
Alignment:
Q  1 cagcaatggaagcagcagtttgccaaggagttttgccataatcacgcctcagagtggctttcaacttattccgaggattactacaaaatgcatttatttc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  2952566 cagcaatggaagcagcagtttgccaaggagttttgccataatcacgcctcagagtggctttcaacttattccaaggattactacaaaatgcatttatttc 2952467  T
Q  101 tttgccaataatagagaattgagaactgatattagaatatacaacattatttttgcaaagaccattaaacaaattagccacagaatcaccactgtctcca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||   |||||||| ||||||||||   |||||||||||||||| ||| ||||||    
T  2952466 tttgccaataatagagaattgagaactgatattagaatatacaacatt---tttgcaaataccattaaacctgttagccacagaatcactactttctcca 2952370  T
Q  201 agcatatttttcagtatttccctccgaacaagtatatccacatccttaccagtatttataagggaatccataatagtaatataatcaagaatatacgact 300  Q
    |||||||| |  ||||| ||||||||||||||||||||||||||  ||||||||||||||| | |||||| || |  || |||||||  |||||| ||||    
T  2952369 agcatattatctagtatatccctccgaacaagtatatccacatcggtaccagtatttataatgtaatccaaaacaacaacataatcagcaatatatgact 2952270  T
Q  301 tcttagggtaatgacactgctccaaagcaaccatattccgaaataaagtttcggtcgaatcctgaactaataattgaggaatttcaagaactcctcccga 400  Q
     || ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||  ||||||||||||||||||||||||| ||||    
T  2952269 cctcagggtaatgacactgctccaaagcaaccatattccgaaataaagtttcggttgaatcctgaacttttaattgaggaatttcaagaactccttccga 2952170  T
Q  401 aaacctcaagtcaagtaaacacttgctttttgtgttcactttaaacttaactccagcttctaac 464  Q
    |||||||||||||||||||||||| ||||  ||||||||||||||| |||||||||||||||||    
T  2952169 aaacctcaagtcaagtaaacacttactttcagtgttcactttaaacctaactccagcttctaac 2952106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 464
Target Start/End: Complemental strand, 2938090 - 2937633
Alignment:
Q  1 cagcaatggaagcagcagtttgccaaggagttttgccataatcacgcctcagagtggctttcaacttattccgaggattactacaaaatgcatttatttc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| || ||||||||| || || ||||||| |||    
T  2938090 cagcaatggaagcagcagtttgccaaggagttttgccataatcacgcctcagagtagccttcaacttatgccaaggattactgcagaaagcatttaattc 2937991  T
Q  101 tttgccaataatagagaattgagaactgatattagaatatacaacattatttttgcaaagaccattaaacaaattagccacagaatcaccactgtctcca 200  Q
    ||||| || ||||||||||||||||||||||| |||||||||||||||   ||||||||||||||||||||||||||||||||||||||   ||||||||    
T  2937990 tttgcaaagaatagagaattgagaactgatatcagaatatacaacatt---tttgcaaagaccattaaacaaattagccacagaatcac---tgtctcca 2937897  T
Q  201 agcatatttttcagtatttccctccgaacaagtatatccacatccttaccagtatttataagggaatccataatagtaatataatcaagaatatacgact 300  Q
    |||  ||||| ||||||||   ||| |||||||||| || |||||||||| |||||||||||| |||||| || |  || |||||||  |||||| ||||    
T  2937896 agccaattttccagtattttgttccaaacaagtatacccgcatccttaccggtatttataaggtaatccaaaacaacaacataatcagcaatatatgact 2937797  T
Q  301 tcttagggtaatgacactgctccaaagcaaccatattccgaaataaagtttcggtcgaatcctgaactaataattgaggaatttcaagaactcctcccga 400  Q
      | ||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||| ||||  ||||||||||||||||||||||||||| ||    
T  2937796 catgagggtaatgacactgctccaaagcaaccatattccaaaacaaaatttcggtcgaatcctcaactgttaattgaggaatttcaagaactcctcctga 2937697  T
Q  401 aaacctcaagtcaagtaaacacttgctttttgtgttcactttaaacttaactccagcttctaac 464  Q
    ||| ||||||||||||||||| || ||||  ||||||||||||||| |||||||||||||||||    
T  2937696 aaatctcaagtcaagtaaacaattactttcagtgttcactttaaacctaactccagcttctaac 2937633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 3 - 464
Target Start/End: Complemental strand, 2927788 - 2927333
Alignment:
Q  3 gcaatggaagcagcagtttgccaaggagttttgccataatcacgcctcagagtggctttcaacttattccgaggattactacaaaatgcatttatttctt 102  Q
    |||||||||||||||||||||||||||||||||| |||||||||||| ||||| || ||||||||||  || |||||  ||||| | |||||||  ||||    
T  2927788 gcaatggaagcagcagtttgccaaggagttttgcaataatcacgcctgagagtagccttcaacttatgtcgtggattcttacaataagcatttaagtctt 2927689  T
Q  103 tgccaataatagagaattgagaactgatattagaatatacaacattatttttgcaaagaccattaaacaaattagccacagaatcaccactgtctccaag 202  Q
    ||| || |||||||||||||||||||||  |||||  |  ||||||   ||| | ||||||||||||||| |||||||||||||||||   |||||||||    
T  2927688 tgcaaagaatagagaattgagaactgattgtagaacgtgtaacatt---tttaccaagaccattaaacaagttagccacagaatcacc---gtctccaag 2927595  T
Q  203 catatttttcagtatttccctccgaacaagtatatccacatccttaccagtatttataagggaatccataatagtaatataatcaagaatatacgacttc 302  Q
    |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| || || |  |||||||  |||||| || |      
T  2927594 catattttccagtatttccctctgaacaagtatatccacatccttaccagtatttataaggtaatccaaaacagaacgataatcagtaatatatgaatca 2927495  T
Q  303 ttagggtaatgacactgctccaaagcaaccatattccgaaataaagtttcggtcgaatcctgaactaataattgaggaatttcaagaactcctcccgaaa 402  Q
    | |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||  ||||||||||||||||||||||||||||||||    
T  2927494 tcagggtaatgacactgctccaaagcaaccatattccgtaataaagtttcagtcgaatcctgaacttttaattgaggaatttcaagaactcctcccgaaa 2927395  T
Q  403 acctcaagtcaagtaaacacttgctttttgtgttcactttaaacttaactccagcttctaac 464  Q
    |||||||||||||||||||||| ||||  ||||||||||||||| |||||||||||||||||    
T  2927394 acctcaagtcaagtaaacacttactttcagtgttcactttaaacctaactccagcttctaac 2927333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 464
Target Start/End: Original strand, 3003232 - 3003689
Alignment:
Q  1 cagcaatggaagcagcagtttgccaaggagttttgccataatcacgcctcagagtggctttcaacttattccgaggattactacaaaatgcatttatttc 100  Q
    ||||||||||||||||||||||||| |||||||||| |||||||||||| ||||| || |||||||||| ||  |||||  ||||| | |||||||  ||    
T  3003232 cagcaatggaagcagcagtttgccagggagttttgcaataatcacgcctgagagtagccttcaacttatgccatggattcttacaataagcatttaagtc 3003331  T
Q  101 tttgccaataatagagaattgagaactgatattagaatatacaacattatttttgcaaagaccattaaacaaattagccacagaatcaccactgtctcca 200  Q
    |||||||| |||||||||||||||||||||  |||||  || ||   ||| ||||| ||||||||||||||| ||||||||||||||||   ||||||||    
T  3003332 tttgccaagaatagagaattgagaactgattgtagaacgtataa---tatctttgccaagaccattaaacaagttagccacagaatcac---tgtctcca 3003425  T
Q  201 agcatatttttcagtatttccctccgaacaagtatatccacatccttaccagtatttataagggaatccataatagtaatataatcaagaatatacgact 300  Q
    |||||||||| ||||||||| ||| ||||||||||||||||||||||| |||||||||||||| |||||| || || |  ||||||   |||||| || |    
T  3003426 agcatattttccagtatttcgctctgaacaagtatatccacatccttagcagtatttataaggtaatccaaaacagaacgataatcggtaatatatgaat 3003525  T
Q  301 tcttagggtaatgacactgctccaaagcaaccatattccgaaataaagtttcggtcgaatcctgaactaataattgaggaatttcaagaactcctcccga 400  Q
      | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  3003526 catcagggtaatgacactgctccaaagcaaccatattccgaaataaagtttcggtcgaatccgcaactaataattgaggaatttcaagaactcctcccga 3003625  T
Q  401 aaacctcaagtcaagtaaacacttgctttttgtgttcactttaaacttaactccagcttctaac 464  Q
    |||||||||||||||||||||||| ||||  ||||||||||||||  |||||||||||||||||    
T  3003626 aaacctcaagtcaagtaaacacttactttcagtgttcactttaaatctaactccagcttctaac 3003689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 1 - 464
Target Start/End: Original strand, 2996821 - 2997278
Alignment:
Q  1 cagcaatggaagcagcagtttgccaaggagttttgccataatcacgcctcagagtggctttcaacttattccgaggattactacaaaatgcatttatttc 100  Q
    |||||| ||||||||||| |||||||||||| ||||||||||||||||| ||||| || |||||||||| || |||||| |||||||| |||||||  ||    
T  2996821 cagcaaaggaagcagcagcttgccaaggagtcttgccataatcacgcctgagagtagccttcaacttatgccaaggattcctacaaaaagcatttaagtc 2996920  T
Q  101 tttgccaataatagagaattgagaactgatattagaatatacaacattatttttgcaaagaccattaaacaaattagccacagaatcaccactgtctcca 200  Q
     |||| || |||||||||||||||||||||||| | || |||||||||   | ||||||||||||||||||| ||||||||||||||||   ||||||||    
T  2996921 cttgcaaagaatagagaattgagaactgatattggtatgtacaacatt---tatgcaaagaccattaaacaagttagccacagaatcac---tgtctcca 2997014  T
Q  201 agcatatttttcagtatttccctccgaacaagtatatccacatccttaccagtatttataagggaatccataatagtaatataatcaagaatatacgact 300  Q
    |||  ||||| |||||||||  |  ||||||||||||| |||||||||||||| ||||||||| |||||| || || || |||||||  ||||||  |||    
T  2997015 agccaattttccagtatttctttgtgaacaagtatatcaacatccttaccagtgtttataaggtaatccaaaacagaaacataatcagtaatatataact 2997114  T
Q  301 tcttagggtaatgacactgctccaaagcaaccatattccgaaataaagtttcggtcgaatcctgaactaataattgaggaatttcaagaactcctcccga 400  Q
    | |||| ||||||| ||||||||||||||||||||||||||||||||| |||||||  ||||| ||| | |||   |||||||||||||||| |||||||    
T  2997115 tgttagtgtaatgaaactgctccaaagcaaccatattccgaaataaagcttcggtccgatcctcaacaattaacgaaggaatttcaagaacttctcccga 2997214  T
Q  401 aaacctcaagtcaagtaaacacttgctttttgtgttcactttaaacttaactccagcttctaac 464  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  2997215 aaacctcaagtcaagtaaacacttgcttttagtgttcactttaaacttaactccagcttctaac 2997278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 1 - 464
Target Start/End: Complemental strand, 2935229 - 2934772
Alignment:
Q  1 cagcaatggaagcagcagtttgccaaggagttttgccataatcacgcctcagagtggctttcaacttattccgaggattactacaaaatgcatttatttc 100  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||| ||||| || |||||||||| || ||||||  ||||||| |||||||  ||    
T  2935229 cagcaatggaagcagcagtttgccaaggagttttgcaataatcacgcctgagagtagccttcaacttatgccaaggattcttacaaaaagcatttaagtc 2935130  T
Q  101 tttgccaataatagagaattgagaactgatattagaatatacaacattatttttgcaaagaccattaaacaaattagccacagaatcaccactgtctcca 200  Q
    |||||  | ||||||||| ||||||||||||||||| | |  |||   |||||| ||||||||||||||||| |||||||||||||   |||| ||  ||    
T  2935129 tttgcatagaatagagaaatgagaactgatattagattgtgtaac---atttttccaaagaccattaaacaagttagccacagaat---cactatccgca 2935036  T
Q  201 agcatatttttcagtatttccctccgaacaagtatatccacatccttaccagtatttataagggaatccataatagtaatataatcaagaatatacgact 300  Q
    |||||||| | |||||||||  ||||||||||||||||  ||||| ||||||||||||||||| ||||||| | || || |||||||   ||||| || |    
T  2935035 agcatattatgcagtatttcgttccgaacaagtatatcagcatccgtaccagtatttataaggtaatccatgacagcaacataatcagtgatatatgaat 2934936  T
Q  301 tcttagggtaatgacactgctccaaagcaaccatattccgaaataaagtttcggtcgaatcctgaactaataattgaggaatttcaagaactcctcccga 400  Q
      | ||||||||||||||||||||||||||||||||| |||||  || |||| |||  ||| | |||   ||||||||||||||||||||||||||||||    
T  2934935 catcagggtaatgacactgctccaaagcaaccatatttcgaaacgaaatttcagtcctatcgtcaaccgttaattgaggaatttcaagaactcctcccga 2934836  T
Q  401 aaacctcaagtcaagtaaacacttgctttttgtgttcactttaaacttaactccagcttctaac 464  Q
    |||||||||||||||||||||||| ||||| || |||||||||||| |||||||||||||||||    
T  2934835 aaacctcaagtcaagtaaacacttacttttagtattcactttaaacctaactccagcttctaac 2934772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 1 - 464
Target Start/End: Complemental strand, 2974637 - 2974180
Alignment:
Q  1 cagcaatggaagcagcagtttgccaaggagttttgccataatcacgcctcagagtggctttcaacttattccgaggattactacaaaatgcatttatttc 100  Q
    ||||||||||||||||||| ||||||||||| |||| |||||||||||| ||||  || |||||| ||| || |||||| |||||| | ||||| | |||    
T  2974637 cagcaatggaagcagcagtgtgccaaggagtattgcaataatcacgccttagagcagccttcaacctatgccaaggattcctacaataagcattcaattc 2974538  T
Q  101 tttgccaataatagagaattgagaactgatattagaatatacaacattatttttgcaaagaccattaaacaaattagccacagaatcaccactgtctcca 200  Q
    ||||| || ||||||||| ||||||||||||||||||| |  ||   ||||||  | |||||||||||| ||  |||| ||||||||||   ||||||||    
T  2974537 tttgcaaagaatagagaaatgagaactgatattagaatttgtaa---tattttctccaagaccattaaataagatagcaacagaatcac---tgtctcca 2974444  T
Q  201 agcatatttttcagtatttccctccgaacaagtatatccacatccttaccagtatttataagggaatccataatagtaatataatcaagaatatacgact 300  Q
    |||  ||||| |||||| |  |||||||||||||||||||||||| ||| ||||||||||||| |||||| ||||  |  |||||||| |||||| ||||    
T  2974443 agccaattttgcagtatattgctccgaacaagtatatccacatccgtactagtatttataaggtaatccaaaataaaatgataatcaataatatatgact 2974344  T
Q  301 tcttagggtaatgacactgctccaaagcaaccatattccgaaataaagtttcggtcgaatcctgaactaataattgaggaatttcaagaactcctcccga 400  Q
      | ||||||||||||||||||||||||||||||||||||||| ||| ||||||||  ||| ||||||  ||||||||||||||||||||||||||||||    
T  2974343 gataagggtaatgacactgctccaaagcaaccatattccgaaacaaaatttcggtcccatcttgaactgttaattgaggaatttcaagaactcctcccga 2974244  T
Q  401 aaacctcaagtcaagtaaacacttgctttttgtgttcactttaaacttaactccagcttctaac 464  Q
    ||||||||||||| ||||||| |  ||||| ||||||||||||||| |||||||||||||||||    
T  2974243 aaacctcaagtcatgtaaacattcacttttagtgttcactttaaacctaactccagcttctaac 2974180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 464
Target Start/End: Complemental strand, 2929939 - 2929482
Alignment:
Q  1 cagcaatggaagcagcagtttgccaaggagttttgccataatcacgcctcagagtggctttcaacttattccgaggattactacaaaatgcatttatttc 100  Q
    |||||||||||||||||||||||||||||||  | | |||||||||||| ||||| || |||||| ||| || ||||||   |||||| |||||||  ||    
T  2929939 cagcaatggaagcagcagtttgccaaggagtacttcaataatcacgcctgagagtagccttcaacctatgccaaggattctaacaaaaagcatttaagtc 2929840  T
Q  101 tttgccaataatagagaattgagaactgatattagaatatacaacattatttttgcaaagaccattaaacaaattagccacagaatcaccactgtctcca 200  Q
    |||||  | ||||||||| |||| |||||||||||||| || ||   ||| |||||||| |||||||||||  ||||||||||||| |    ||||||||    
T  2929839 tttgcatagaatagagaaatgaggactgatattagaatgtataa---tatatttgcaaaaaccattaaacatgttagccacagaatgat---tgtctcca 2929746  T
Q  201 agcatatttttcagtatttccctccgaacaagtatatccacatccttaccagtatttataagggaatccataatagtaatataatcaagaatatacgact 300  Q
    | |  ||||| |||||||||  || ||| |||||||||  | ||||||||||||||||||||  ||||||||||||||| ||||||||||||||| ||||    
T  2929745 aaccaattttccagtatttctttctgaataagtatatcggcgtccttaccagtatttataagaaaatccataatagtaacataatcaagaatatatgact 2929646  T
Q  301 tcttagggtaatgacactgctccaaagcaaccatattccgaaataaagtttcggtcgaatcctgaactaataattgaggaatttcaagaactcctcccga 400  Q
      | |||||||||| ||||||||||||||| |||||||| ||||||||||||||||  |||   ||||  ||||||||||||||||||||||||||| ||    
T  2929645 catgagggtaatgaaactgctccaaagcaatcatattccaaaataaagtttcggtcccatctgcaactgttaattgaggaatttcaagaactcctcctga 2929546  T
Q  401 aaacctcaagtcaagtaaacacttgctttttgtgttcactttaaacttaactccagcttctaac 464  Q
    |||||| ||||||||||||||||| ||||| ||||||||||||||| |||||||||||||||||    
T  2929545 aaaccttaagtcaagtaaacacttacttttagtgttcactttaaacctaactccagcttctaac 2929482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 74 - 464
Target Start/End: Complemental strand, 2965066 - 2964682
Alignment:
Q  74 aggattactacaaaatgcatttatttctttgccaataatagagaattgagaactgatattagaatatacaacattatttttgcaaagaccattaaacaaa 173  Q
    |||||| | |||||| ||||| |  ||||||| || |||||||||||||  |||||||||||||| || |||||    |||| ||||||||||||||||     
T  2965066 aggattcccacaaaaagcattcaaatctttgcaaagaatagagaattgaagactgatattagaatgtataacata---tttggaaagaccattaaacaag 2964970  T
Q  174 ttagccacagaatcaccactgtctccaagcatatttttcagtatttccctccgaacaagtatatccacatccttaccagtatttataagggaatccataa 273  Q
    |||||||||||||||| |   |||||||||||||||| ||||||||   || |||||||||||||||||||||| ||||||||||||||| |||||| ||    
T  2964969 ttagccacagaatcacta---tctccaagcatattttccagtattttgttctgaacaagtatatccacatccttgccagtatttataaggtaatccaaaa 2964873  T
Q  274 tagtaatataatcaagaatatacgacttcttagggtaatgacactgctccaaagcaaccatattccgaaataaagtttcggtcgaatcctgaactaataa 373  Q
     || || ||| |||  |||||| ||||  | ||||||| ||||||||||||||||||||||||||||||| | | ||||||||  ||| ||| ||| |||    
T  2964872 cagcaacatagtcagtaatatatgactcataagggtaacgacactgctccaaagcaaccatattccgaaacataatttcggtcccatcgtgagctattaa 2964773  T
Q  374 ttgaggaatttcaagaactcctcccgaaaacctcaagtcaagtaaacacttgctttttgtgttcactttaaacttaactccagcttctaac 464  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  ||||||||||||||| |||||||||||||||||    
T  2964772 ttgaggaatttcaagaactcctcccgaaaacctcaagtcaagtaaacacttactttcagtgttcactttaaacctaactccagcttctaac 2964682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 1 - 462
Target Start/End: Complemental strand, 2983496 - 2983038
Alignment:
Q  1 cagcaatggaagcagcagtttgccaaggagttttgccataatcacgcctcagagtggctttcaacttattccgaggattactacaaaatgcatttatttc 100  Q
    |||||| |||||||||| ||| ||||||||| ||||||||||||||||| |||||||| ||||||||||||| ||||||| ||||||| ||||  | |||    
T  2983496 cagcaacggaagcagcaattttccaaggagtattgccataatcacgcctgagagtggccttcaacttattcctaggattattacaaaaagcatccaattc 2983397  T
Q  101 tttgccaataatagagaattgagaactgatattagaatatacaacattatttttgcaaagaccattaaacaaattagccacagaatcaccactgtctcca 200  Q
     |||  || | |   ||| ||| ||||||  ||||| | |||||||||   |||||||||||||||||||||  |||||| ||| | |||   |||||||    
T  2983396 attggaaagacttacgaaatgataactgagtttagattttacaacatt---tttgcaaagaccattaaacaagatagccatagattgacc---gtctcca 2983303  T
Q  201 agcatatttttcagtatttccctccgaacaagtatatccacatccttaccagtatttataagggaatccataatagtaatataatcaagaatatacgact 300  Q
    ||||  ||||  ||||||| | || ||| ||||| |||||||||||||||| ||||||||||| |||||| || |  || ||||||||||||||| ||||    
T  2983302 agcaagttttctagtatttgcttctgaataagtacatccacatccttaccattatttataaggtaatccaaaacaagaacataatcaagaatatatgact 2983203  T
Q  301 tcttagggtaatgacactgctccaaagcaaccatattccgaaataaagtttcggtcga---atcctgaactaataattgaggaatttcaagaactcctcc 397  Q
      | |||||||||||| ||||||||||||| |||||||||||| ||| |||||||||    ||| ||||||| |||||||||||||||||||||||||||    
T  2983202 catgagggtaatgacaatgctccaaagcaatcatattccgaaacaaaatttcggtcgtccgatcatgaactattaattgaggaatttcaagaactcctcc 2983103  T
Q  398 cgaaaacctcaagtcaagtaaacacttgctttttgtgttcactttaaacttaactccagcttcta 462  Q
    ||||||||||||||||  ||||||||| ||||| || ||||||| |||| |||||||||||||||    
T  2983102 cgaaaacctcaagtcatataaacacttacttttagttttcacttgaaacctaactccagcttcta 2983038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 149 - 464
Target Start/End: Original strand, 2658578 - 2658896
Alignment:
Q  149 atttttgcaaagaccattaaacaaattagccacagaatcaccactgtctccaagcatatttttcagtatttccctccgaacaagtatatccacatcctta 248  Q
    |||||||||||||||| ||||||| ||||||||||||||||   |||||||||||  ||||| ||||||||   |  |||||||||||||||||||||||    
T  2658578 atttttgcaaagaccagtaaacaagttagccacagaatcac---tgtctccaagccaattttccagtattttgtttggaacaagtatatccacatcctta 2658674  T
Q  249 ccagtatttataagggaatccataatagtaatataatcaagaatatacgacttcttagggtaatgacactgctccaaagcaaccatattccgaaataaag 348  Q
    ||||||||||||||| |||||| || || || |||||||  |||||| ||||  | |||||||||||| |||||||||||||||||||| ||||| |||     
T  2658675 ccagtatttataaggtaatccaaaacagcaacataatcagtaatatatgactcataagggtaatgacattgctccaaagcaaccatatttcgaaacaaaa 2658774  T
Q  349 tttcggtcgaatcctgaactaataattgaggaatttcaagaactcctcc------cgaaaacctcaagtcaagtaaacacttgctttttgtgttcacttt 442  Q
    |||| |||  ||| | |||   |||||||||||||||||||||||||||       |||||||||||||||||||||||||| ||||| ||| |||||||    
T  2658775 tttcagtcctatcgtcaaccgttaattgaggaatttcaagaactcctcctgattttgaaaacctcaagtcaagtaaacacttacttttagtgctcacttt 2658874  T
Q  443 aaacttaactccagcttctaac 464  Q
    |||| |||||||||||||||||    
T  2658875 aaacctaactccagcttctaac 2658896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 333 - 464
Target Start/End: Complemental strand, 2978550 - 2978420
Alignment:
Q  333 atattccgaaataaagtttcggtcgaatcctgaactaataattgaggaatttcaagaactcctcccgaaaacctcaagtcaagtaaacacttgctttttg 432  Q
    |||| |||||| ||| ||||||||  ||||| ||||  ||||||||||||||||||||||||||||||||||||||| |||||||||||||  ||||| |    
T  2978550 atataccgaaacaaaatttcggtcccatcctcaactcttaattgaggaatttcaagaactcctcccgaaaacctcaaatcaagtaaacactcacttttag 2978451  T
Q  433 tgttcactttaaacttaactccagcttctaac 464  Q
    |||||||||||||| ||| |||||||||||||    
T  2978450 tgttcactttaaacctaa-tccagcttctaac 2978420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 149 - 336
Target Start/End: Complemental strand, 2979373 - 2979192
Alignment:
Q  149 atttttgcaaagaccattaaacaaattagccacagaatcaccactgtctccaagcatatttttcagtatttccctccgaacaagtatatccacatcctta 248  Q
    ||||| ||||||| |||||||||| |||||  |||||| ||   |||||||||||| ||||| ||||||||  |||||||||||||||||||||||| ||    
T  2979373 attttcgcaaagatcattaaacaatttagcagcagaatgac---tgtctccaagcaaattttccagtattttgctccgaacaagtatatccacatccgta 2979277  T
Q  249 ccagtatttataagggaatccataatagtaatataatcaagaatatacgacttcttagggtaatgacactgctccaaagcaaccatat 336  Q
    || |||||||||||| |||| |  |    || |||||||  |||||| ||||  | |||||||| |||||||||||||||||||||||    
T  2979276 ccggtatttataaggtaatcgaaga---caacataatcagtaatatatgactcatgagggtaataacactgctccaaagcaaccatat 2979192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 371 - 423
Target Start/End: Complemental strand, 2954607 - 2954555
Alignment:
Q  371 taattgaggaatttcaagaactcctcccgaaaacctcaagtcaagtaaacact 423  Q
    ||||||||||||| ||||||||| |   |||||||||||||||||||||||||    
T  2954607 taattgaggaattccaagaactcgttgtgaaaacctcaagtcaagtaaacact 2954555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 226 - 270
Target Start/End: Complemental strand, 2985739 - 2985695
Alignment:
Q  226 gaacaagtatatccacatccttaccagtatttataagggaatcca 270  Q
    |||||||||||||| ||||||||| ||||||||||||| ||||||    
T  2985739 gaacaagtatatccgcatccttactagtatttataaggtaatcca 2985695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 2965157 - 2965091
Alignment:
Q  1 cagcaatggaagcagcagtttgccaaggagttttgccataatcacgcctcagagtggctttcaactt 67  Q
    |||||| ||||||||||| ||||||||||||  |||  ||||||||| |||||||||  ||||||||    
T  2965157 cagcaaaggaagcagcagcttgccaaggagtactgcagtaatcacgcatcagagtggacttcaactt 2965091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 60 - 134
Target Start/End: Complemental strand, 2979450 - 2979376
Alignment:
Q  60 ttcaacttattccgaggattactacaaaatgcatttatttctttgccaataatagagaattgagaactgatatta 134  Q
    ||||||| || || |||||||||| ||||  ||||||  ||||||| || ||||||||| |||||||||||||||    
T  2979450 ttcaactcatgccaaggattactataaaaatcatttaaatctttgcaaagaatagagaaatgagaactgatatta 2979376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 216; Significance: 1e-118; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 1 - 464
Target Start/End: Original strand, 34690 - 35147
Alignment:
Q  1 cagcaatggaagcagcagtttgccaaggagttttgccataatcacgcctcagagtggctttcaacttattccgaggattactacaaaatgcatttatttc 100  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||| ||||  || |||||| |||||| |||||||||||||||||||||||  |     
T  34690 cagcaacggaagcagcagtttgccaaggagttttgccataatcacgcctgagagaagccttcaacctattccaaggattactacaaaatgcatttaagtt 34789  T
Q  101 tttgccaataatagagaattgagaactgatattagaatatacaacattatttttgcaaagaccattaaacaaattagccacagaatcaccactgtctcca 200  Q
    ||||| || ||||||||| |||||||||||||||  || || |||   |||||||||||||| ||||||||| |||||||||||||   |||||||||||    
T  34790 tttgcaaagaatagagaaatgagaactgatattatgatgtataac---atttttgcaaagacgattaaacaagttagccacagaat---cactgtctcca 34883  T
Q  201 agcatatttttcagtatttccctccgaacaagtatatccacatccttaccagtatttataagggaatccataatagtaatataatcaagaatatacgact 300  Q
    |||| |||  ||||||||||  ||||||||||||||||| ||||||||||||||||||||||| |||||| || |  || |||||||  |||||| ||||    
T  34884 agcaaattagtcagtatttctttccgaacaagtatatccgcatccttaccagtatttataaggaaatccaaaacaacaacataatcagtaatatatgact 34983  T
Q  301 tcttagggtaatgacactgctccaaagcaaccatattccgaaataaagtttcggtcgaatcctgaactaataattgaggaatttcaagaactcctcccga 400  Q
      | ||||||||||||||||||||||||||||||||||||||| ||| ||||||||  ||||| ||||  |||| ||||||||||||| |||||| ||||    
T  34984 cataagggtaatgacactgctccaaagcaaccatattccgaaacaaaatttcggtcccatcctcaacttctaatcgaggaatttcaagcactccttccga 35083  T
Q  401 aaacctcaagtcaagtaaacacttgctttttgtgttcactttaaacttaactccagcttctaac 464  Q
    ||||| |||||||||||||||||  ||||| |  ||||||| |||| |||||||||||||||||    
T  35084 aaaccccaagtcaagtaaacactcacttttaggcttcacttgaaacctaactccagcttctaac 35147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 157 - 423
Target Start/End: Original strand, 44532 - 44795
Alignment:
Q  157 aaagaccattaaacaaattagccacagaatcaccactgtctccaagcatatttttcagtatttccctccgaacaagtatatccacatccttaccagtatt 256  Q
    ||||| |||||||||||||||||||| ||| ||   |||||||||||| ||||| ||||||||  ||||||||| |||||||  ||||||||||||||||    
T  44532 aaagatcattaaacaaattagccacataatgac---tgtctccaagcaaattttccagtattttgctccgaacatgtatatctgcatccttaccagtatt 44628  T
Q  257 tataagggaatccataatagtaatataatcaagaatatacgacttcttagggtaatgacactgctccaaagcaaccatattccgaaataaagtttc-ggt 355  Q
    ||||||| |||||| ||||| || ||||| || |||||| || |  |||||||||||| ||| ||||| |||||||||||| | ||| ||| |||| |||    
T  44629 tataaggtaatccaaaatagcaacataattaataatatatgattcattagggtaatgatactactccatagcaaccatatttcaaaacaaaatttcaggt 44728  T
Q  356 cgaatcctgaactaataattgaggaatttcaagaactcctcccgaaaacctcaagtcaagtaaacact 423  Q
     | ||| | | ||  ||||||||||||||||||||||| | | ||||||||||| |||||||||||||    
T  44729 tg-atcatcagctcttaattgaggaatttcaagaactctttctgaaaacctcaaatcaagtaaacact 44795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 464
Target Start/End: Complemental strand, 3339655 - 3339198
Alignment:
Q  1 cagcaatggaagcagcagtttgccaaggagttttgccataatcacgcctcagagtggctttcaacttattccgaggattactacaaaatgcatttatttc 100  Q
    ||||||||||||||||||||||||||||||| |||| |||||||||||| |||||||| |||||| ||| || ||||||  |||||||  ||||||  ||    
T  3339655 cagcaatggaagcagcagtttgccaaggagtattgcaataatcacgcctgagagtggccttcaacctatgccaaggattcttacaaaaatcatttaagtc 3339556  T
Q  101 tttgccaataatagagaattgagaactgatattagaatatacaacattatttttgcaaagaccattaaacaaattagccacagaatcaccactgtctcca 200  Q
    |||||||| | ||| ||| |||||||| | | ||||||  | |||   |||||||||||||||||||||||| |||||||||||||   |||||||| ||    
T  3339555 tttgccaagagtagggaaatgagaacttacactagaatgcataac---atttttgcaaagaccattaaacaatttagccacagaat---cactgtctgca 3339462  T
Q  201 agcatatttttcagtatttccctccgaacaagtatatccacatccttaccagtatttataagggaatccataatagtaatataatcaagaatatacgact 300  Q
    |||  |||||  |||||||| |||  ||||||||||||||||||| ||| ||||||||||||| |||||| || || || |||||||| |||||| ||||    
T  3339461 agccaattttctagtatttcgctcttaacaagtatatccacatccatactagtatttataaggaaatccaaaaaagcaacataatcaataatatatgact 3339362  T
Q  301 tcttagggtaatgacactgctccaaagcaaccatattccgaaataaagtttcggtcgaatcctgaactaataattgaggaatttcaagaactcctcccga 400  Q
      | ||||||||||||||||||||||||||||||||||||||| ||| ||||||||  ||| | ||||  ||||||||||||||||||||||||||||||    
T  3339361 catcagggtaatgacactgctccaaagcaaccatattccgaaacaaaatttcggtcccatcgtcaactgttaattgaggaatttcaagaactcctcccga 3339262  T
Q  401 aaacctcaagtcaagtaaacacttgctttttgtgttcactttaaacttaactccagcttctaac 464  Q
    |||||||||| ||||||||||||  ||||| ||||||||||||||| ||||||| |||||||||    
T  3339261 aaacctcaagccaagtaaacactcacttttagtgttcactttaaacctaactcctgcttctaac 3339198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 112; Significance: 2e-56; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 1 - 464
Target Start/End: Complemental strand, 49614066 - 49613609
Alignment:
Q  1 cagcaatggaagcagcagtttgccaaggagttttgccataatcacgcctcagagtggctttcaacttattccgaggattactacaaaatgcatttatttc 100  Q
    ||||||||||||||||||||||||||||| | |||| ||||||||| || ||||| || |||||  ||| || ||||| |  ||||||  |||| |  ||    
T  49614066 cagcaatggaagcagcagtttgccaaggactgttgcaataatcacgtctgagagtcgccttcaatctatgccaaggatcatgacaaaaaccattcaagtc 49613967  T
Q  101 tttgccaataatagagaattgagaactgatattagaatatacaacattatttttgcaaagaccattaaacaaattagccacagaatcaccactgtctcca 200  Q
    ||  |  | ||||||| | |||||||||| ||   ||| |  ||||||   ||| ||||||| ||||||||| |||||||||||||||| |   || |||    
T  49613966 ttcacatagaatagagtactgagaactgaaatacaaatgtgtaacatt---tttccaaagactattaaacaagttagccacagaatcacta---tcccca 49613873  T
Q  201 agcatatttttcagtatttccctccgaacaagtatatccacatccttaccagtatttataagggaatccataatagtaatataatcaagaatatacgact 300  Q
    |||  |||   |||||||| | || |||||||||||||||||||||| |||||||| |||||| |||||| || || || ||||||   ||| || ||||    
T  49613872 agccaattcaccagtattttcttctgaacaagtatatccacatccttgccagtattaataaggaaatccaaaacagcaacataatccgtaatgtaggact 49613773  T
Q  301 tcttagggtaatgacactgctccaaagcaaccatattccgaaataaagtttcggtcgaatcctgaactaataattgaggaatttcaagaactcctcccga 400  Q
       ||||||| ||||| |||||||||||||||||||||||||| ||| |||| ||| |||||| ||||   |||||||||||||||||||| | ||| ||    
T  49613772 cactagggtagtgacattgctccaaagcaaccatattccgaaacaaaatttcagtccaatcctcaactttcaattgaggaatttcaagaacccgtcctga 49613673  T
Q  401 aaacctcaagtcaagtaaacacttgctttttgtgttcactttaaacttaactccagcttctaac 464  Q
    ||||||||| |||||||||||||  ||||| ||||||||||||||| | || ||||||||||||    
T  49613672 aaacctcaaatcaagtaaacactcacttttagtgttcactttaaacctcaccccagcttctaac 49613609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 1 - 464
Target Start/End: Complemental strand, 49619041 - 49618597
Alignment:
Q  1 cagcaatggaagcagcagtttgccaaggagttttgccataatcacgcctcagagtggctttcaacttattccgaggattactacaaaatgcatttatttc 100  Q
    |||||||||||||||||||||||||||||||  |||||||||||||||| ||||| || ||||  |||| || ||||||| |||||||  |||  | | |    
T  49619041 cagcaatggaagcagcagtttgccaaggagtactgccataatcacgcctgagagtagccttcagtttatgccaaggattattacaaaaaccatcaagt-c 49618943  T
Q  101 tttgccaataatagagaattgagaactgatattagaatatacaacattatttttgcaaagaccattaaacaaattagccacagaatcaccactgtctcca 200  Q
    |||   || || | |||| |||||||||| |||   || |  ||||||   ||| |||||||||||| |||| || |||||||||||||   ||||| ||    
T  49618942 tttaggaagaagacagaaatgagaactgaaatttatatgtgaaacatt---tttccaaagaccattatacaagtttgccacagaatcac---tgtctgca 49618849  T
Q  201 agcatatttttcagtatttccctccgaacaagtatatccacatccttaccagtatttataagggaatccataatagtaatataatcaagaatatacgact 300  Q
    |||||||| | | ||||| | ||| |||||||||||||| ||||| ||||  ||||||||||| |||||| || || ||||||||||  |||||| || |    
T  49618848 agcatattatcctgtattcctctctgaacaagtatatccgcatccctaccgatatttataaggtaatccaaaacagaaatataatcataaatataggaat 49618749  T
Q  301 tcttagggtaatgacactgctccaaagcaaccatattccgaaataaagtttcggtcgaatcctgaactaataattgaggaatttcaagaactcctcccga 400  Q
      | ||||||||||           |||||||||||||| |||||||||| |||||   |||| ||||  ||||||||||||||||||||||| ||| ||    
T  49618748 catgagggtaatga-----------agcaaccatattcc-aaataaagttacggtccggtcctcaactcttaattgaggaatttcaagaactcgtccgga 49618661  T
Q  401 aaacctcaagtcaagtaaacacttgctttttgtgttcactttaaacttaactccagcttctaac 464  Q
    |||||||||||||||||||||  |  |||| ||||||||||||||| |||||||||||||||||    
T  49618660 aaacctcaagtcaagtaaacatgtagttttagtgttcactttaaacctaactccagcttctaac 49618597  T

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