View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13023_high_10 (Length: 201)
Name: NF13023_high_10
Description: NF13023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13023_high_10 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 40960936 - 40960736
Alignment:
| Q |
1 |
aatatcccttacacccactttacgctctgtgcaaagtttgcaactagcatctgtcatctgtttcacagaagaaaagctaacagttagtcgataatattca |
100 |
Q |
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| T |
40960936 |
aatatcccttacacccactttacgctctgtgcaaagtttgcaactagcatctgtcatctgtttcacagaagaaaagctaacagttagtcgataatattca |
40960837 |
T |
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| Q |
101 |
cacaatttaataggtaacataagattattggagtggagcaaaaagtgacctgcatgtgttgttgttcatcgggctcattcttgggtaattcctcagcagt |
200 |
Q |
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| T |
40960836 |
cacaatttaataggtaacataagattattggagtggagcaaaaagtgacctgcatgtgttgttgttcatcgggctcattcttgggtaattcctcagcagt |
40960737 |
T |
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| Q |
201 |
c |
201 |
Q |
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| T |
40960736 |
c |
40960736 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 31 - 201
Target Start/End: Complemental strand, 40947718 - 40947547
Alignment:
| Q |
31 |
gcaaagtttgcaactagcatctgtcatctgtttcac-agaagaaaagctaacagttagtcgataatattcacacaatttaataggtaacataagattatt |
129 |
Q |
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||||| |||||| | ||||||||||||||||||||| || |||||||| |||| | ||| |||||||||||||||||||| || |||||||| ||| || |
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| T |
40947718 |
gcaaattttgcagcgagcatctgtcatctgtttcaccagtagaaaagccaacattcagtaaataatattcacacaatttaacagataacataaaattgtt |
40947619 |
T |
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| Q |
130 |
ggagtggagcaaaaagtgacctgcatgtgttgttgttcatcgggctcattcttgggtaattcctcagcagtc |
201 |
Q |
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| T |
40947618 |
gggatggagcaaaaagtgacctgcatgtgttgtggctcatcgggctcatccttggatatttcctcagcagtc |
40947547 |
T |
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