View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13023_high_8 (Length: 249)
Name: NF13023_high_8
Description: NF13023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13023_high_8 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 14588423 - 14588665
Alignment:
| Q |
1 |
cttatgatggtttccaagaccgtgttaccgagatactcaaaacttcgaagcctgattgggttttctgtgatttagtatcggattggttaccatcgatagc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14588423 |
cttatgatggtttccaagaccgtgttactgagatattcaaaacttcgaagcctgattgggttttctgtgatttagtatcggattggttaccatcgatagc |
14588522 |
T |
|
| Q |
101 |
caagagtttcaacattccttgtgcgtattacagcataggtgcagctcgaaccttggctttctttaatccaccaggggaacgaaccgacatagacttgtat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||| | ||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14588523 |
caagagtttcaacattccttgtgcgtattacagcataggcgcagctcggaacttggttttctttaatccaccaggggaacgaaccgacatagacttgtat |
14588622 |
T |
|
| Q |
201 |
agtccaccaaaatgggttcctttccaaacaaccattcatctca |
243 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14588623 |
agtccaccaaaatgggttcctttccaaacaaccattcatctca |
14588665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 14622081 - 14622323
Alignment:
| Q |
1 |
cttatgatggtttccaagaccgtgttaccgagatactcaaaacttcgaagcctgattgggttttctgtgatttagtatcggattggttaccatcgatagc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| | |
|
|
| T |
14622081 |
cttatgatggtttccaagaccgtgttaccgagatactcaaaacttcgaagcctgattgggttttctgtgatgtagtatcggattggttaccgtcgataac |
14622180 |
T |
|
| Q |
101 |
caagagtttcaacattccttgtgcgtattacagcataggtgcagctcgaaccttggctttctttaatccaccaggggaacgaaccgacatagacttgtat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||| |||||| | | ||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14622181 |
caagagtttcaacattccttgtgcgtattacagcgtagccgcagcttggaacttgggtttctttaatccaccaggggaacgaaccgacatagacttgtat |
14622280 |
T |
|
| Q |
201 |
agtccaccaaaatgggttcctttccaaacaaccattcatctca |
243 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14622281 |
agtccaccaaaatgggttcctttccaaacaaccattcatctca |
14622323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 12845960 - 12846083
Alignment:
| Q |
1 |
cttatgatggtttccaagaccgtgttaccgagatactcaaaacttcgaagcctgattgggttttctgtgatttagtatcggattggttaccatcgatagc |
100 |
Q |
| |
|
||||||||||| ||||||| |||||| |||||||||||||| || || ||||| |||||||||| |||||| | | || |||||||| || ||||| |
|
|
| T |
12845960 |
cttatgatggtctccaagatgatgttactgagatactcaaaacatcaaaccctgactgggttttctatgattttgctaccgaatggttaccgtcaatagc |
12846059 |
T |
|
| Q |
101 |
caagagtttcaacattccttgtgc |
124 |
Q |
| |
|
||| ||||| ||||| |||||||| |
|
|
| T |
12846060 |
caaaagtttgaacatcccttgtgc |
12846083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 11529965 - 11530203
Alignment:
| Q |
1 |
cttatgatggtttccaagaccgtgttaccgagatactcaaaacttcgaagcctgattgggttttctgtgatttagtatcggattggttaccatcgatagc |
100 |
Q |
| |
|
||||||| ||| |||||| | |||||| |||||||||||||| || ||| ||||||||||||||| ||||| ||| | ||||||||||| |||||||| |
|
|
| T |
11529965 |
cttatgacggtctccaagtcgatgttactgagatactcaaaacatcaaagtctgattgggttttctatgattgtgtagctgattggttaccgtcgatagc |
11530064 |
T |
|
| Q |
101 |
caagagtttcaacattccttgtgcgtattacagcataggtgcagctcgaaccttggctttctttaatccaccaggggaacgaaccgacatagacttgtat |
200 |
Q |
| |
|
||| || | || ||||||||||| |||||||||| | | ||||| | | | | |||||||||||||||| ||| | || | |||||||| |||| |
|
|
| T |
11530065 |
caaaagcctgaatattccttgtgcccattacagcattgttccagcttggaacatatgtttctttaatccaccaaaggatcaaatcaacatagacaggtat |
11530164 |
T |
|
| Q |
201 |
agtccaccaaaatgggttcctttccaaacaaccattcat |
239 |
Q |
| |
|
|| |||||||| |||||||||||| |||||||||||||| |
|
|
| T |
11530165 |
agcccaccaaagtgggttcctttcgaaacaaccattcat |
11530203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 29954000 - 29954123
Alignment:
| Q |
1 |
cttatgatggtttccaagaccgtgttaccgagatactcaaaacttcgaagcctgattgggttttctgtgatttagtatcggattggttaccatcgatagc |
100 |
Q |
| |
|
||||||| ||| |||||||| |||||| ||||||||||||||||| ||||||||||||||||| | ||||| | | | ||||||||||| || ||||| |
|
|
| T |
29954000 |
cttatgacggtctccaagacgatgttactgagatactcaaaacttcaaagcctgattgggttttatatgattatgcagctgattggttaccgtcaatagc |
29954099 |
T |
|
| Q |
101 |
caagagtttcaacattccttgtgc |
124 |
Q |
| |
|
|| || |||||||||||||||| |
|
|
| T |
29954100 |
gaaaagcctcaacattccttgtgc |
29954123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 51370453 - 51370382
Alignment:
| Q |
1 |
cttatgatggtttccaagaccgtgttaccgagatactcaaaacttcgaagcctgattgggttttctgtgatt |
72 |
Q |
| |
|
||||||| ||| | |||||| |||||| || |||||||||||||| ||||||||||||||||||| ||||| |
|
|
| T |
51370453 |
cttatgacggtctacaagacaatgttactgatatactcaaaacttcaaagcctgattgggttttctatgatt |
51370382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 20492135 - 20492205
Alignment:
| Q |
1 |
cttatgatggtttccaagaccgtgttaccgagatactcaaaacttcgaagcctgattgggttttctgtgat |
71 |
Q |
| |
|
||||||||||||| ||||||| |||||| || ||||| |||||||| ||||||||||||||||||| |||| |
|
|
| T |
20492135 |
cttatgatggttttcaagaccatgttactgaaatacttaaaacttcaaagcctgattgggttttctatgat |
20492205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 204 - 243
Target Start/End: Original strand, 1361556 - 1361595
Alignment:
| Q |
204 |
ccaccaaaatgggttcctttccaaacaaccattcatctca |
243 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
1361556 |
ccaccaaaatgggttccttttcaaacaaccattcatctca |
1361595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 73
Target Start/End: Original strand, 1357250 - 1357293
Alignment:
| Q |
30 |
gagatactcaaaacttcgaagcctgattgggttttctgtgattt |
73 |
Q |
| |
|
||||||||||||||||| || |||||||||||||||| |||||| |
|
|
| T |
1357250 |
gagatactcaaaacttcaaatcctgattgggttttctatgattt |
1357293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 239
Target Start/End: Original strand, 20492331 - 20492373
Alignment:
| Q |
197 |
gtatagtccaccaaaatgggttcctttccaaacaaccattcat |
239 |
Q |
| |
|
||||||||||||||| |||||||||||| |||||| ||||||| |
|
|
| T |
20492331 |
gtatagtccaccaaagtgggttcctttcaaaacaaacattcat |
20492373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University