View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13023_low_2 (Length: 411)

Name: NF13023_low_2
Description: NF13023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13023_low_2
NF13023_low_2
[»] chr7 (3 HSPs)
chr7 (50-94)||(2173938-2173982)
chr7 (312-341)||(31924425-31924454)
chr7 (316-348)||(40482626-40482658)
[»] chr5 (3 HSPs)
chr5 (52-94)||(19175976-19176018)
chr5 (321-360)||(13398353-13398392)
chr5 (314-354)||(29587681-29587721)
[»] chr3 (8 HSPs)
chr3 (312-354)||(19730625-19730667)
chr3 (312-354)||(19751237-19751279)
chr3 (315-347)||(31652450-31652482)
chr3 (36-94)||(19730619-19730680)
chr3 (36-81)||(19751231-19751279)
chr3 (321-358)||(18871376-18871412)
chr3 (11-48)||(41384069-41384106)
chr3 (313-361)||(26542361-26542409)
[»] chr8 (3 HSPs)
chr8 (50-95)||(9537375-9537420)
chr8 (50-94)||(28131212-28131256)
chr8 (50-81)||(7541855-7541886)
[»] chr6 (4 HSPs)
chr6 (50-94)||(3740038-3740082)
chr6 (52-94)||(7259177-7259219)
chr6 (318-348)||(32931515-32931545)
chr6 (319-347)||(10338615-10338643)
[»] chr1 (1 HSPs)
chr1 (321-361)||(43371333-43371373)
[»] chr2 (2 HSPs)
chr2 (50-93)||(28148336-28148379)
chr2 (52-93)||(18903392-18903433)


Alignment Details
Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 50 - 94
Target Start/End: Complemental strand, 2173982 - 2173938
Alignment:
Q  50 ataatttgagaaaatagaagtgattgtatgtagtcacaagtgtca 94  Q
    ||||||||||||||||||||| || ||||||||||||||||||||    
T  2173982 ataatttgagaaaatagaagttatggtatgtagtcacaagtgtca 2173938  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 312 - 341
Target Start/End: Original strand, 31924425 - 31924454
Alignment:
Q  312 tgacaccgataataatttaagaaaatagaa 341  Q
    ||||||||||||||||||||||||||||||    
T  31924425 tgacaccgataataatttaagaaaatagaa 31924454  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 316 - 348
Target Start/End: Original strand, 40482626 - 40482658
Alignment:
Q  316 accgataataatttaagaaaatagaagtgatta 348  Q
    ||||||||||||||||||||||| |||||||||    
T  40482626 accgataataatttaagaaaatacaagtgatta 40482658  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 52 - 94
Target Start/End: Complemental strand, 19176018 - 19175976
Alignment:
Q  52 aatttgagaaaatagaagtgattgtatgtagtcacaagtgtca 94  Q
    |||||| ||||||||||||||||||||||| ||||||||||||    
T  19176018 aatttgggaaaatagaagtgattgtatgtaatcacaagtgtca 19175976  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 321 - 360
Target Start/End: Original strand, 13398353 - 13398392
Alignment:
Q  321 taataatttaagaaaatagaagtgattatatgtagtcata 360  Q
    |||||||||||||||||||||||||||| |||||| ||||    
T  13398353 taataatttaagaaaatagaagtgattaaatgtagccata 13398392  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 314 - 354
Target Start/End: Original strand, 29587681 - 29587721
Alignment:
Q  314 acaccgataataatttaagaaaatagaagtgattatatgta 354  Q
    |||||| ||||||||||||||||| |||||||||| |||||    
T  29587681 acaccggtaataatttaagaaaatggaagtgattaaatgta 29587721  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 312 - 354
Target Start/End: Original strand, 19730625 - 19730667
Alignment:
Q  312 tgacaccgataataatttaagaaaatagaagtgattatatgta 354  Q
    |||||||||||||||||| ||||||||||||||||| ||||||    
T  19730625 tgacaccgataataattttagaaaatagaagtgattgtatgta 19730667  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 312 - 354
Target Start/End: Original strand, 19751237 - 19751279
Alignment:
Q  312 tgacaccgataataatttaagaaaatagaagtgattatatgta 354  Q
    |||||||||||||||||| ||||||||||||||||| ||||||    
T  19751237 tgacaccgataataattttagaaaatagaagtgattgtatgta 19751279  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 315 - 347
Target Start/End: Original strand, 31652450 - 31652482
Alignment:
Q  315 caccgataataatttaagaaaatagaagtgatt 347  Q
    |||||||||||||||||||||||||||||||||    
T  31652450 caccgataataatttaagaaaatagaagtgatt 31652482  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 36 - 94
Target Start/End: Original strand, 19730619 - 19730680
Alignment:
Q  36 caacactgacaccgataat---ttgagaaaatagaagtgattgtatgtagtcacaagtgtca 94  Q
    |||||||||||||||||||   || |||||||||||||||||||||||| | || |||||||    
T  19730619 caacactgacaccgataataattttagaaaatagaagtgattgtatgtaattactagtgtca 19730680  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 36 - 81
Target Start/End: Original strand, 19751231 - 19751279
Alignment:
Q  36 caacactgacaccgataat---ttgagaaaatagaagtgattgtatgta 81  Q
    |||||||||||||||||||   || ||||||||||||||||||||||||    
T  19751231 caacactgacaccgataataattttagaaaatagaagtgattgtatgta 19751279  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 321 - 358
Target Start/End: Original strand, 18871376 - 18871412
Alignment:
Q  321 taataatttaagaaaatagaagtgattatatgtagtca 358  Q
    |||||||||||||||||||||||||||| |||||||||    
T  18871376 taataatttaagaaaatagaagtgatta-atgtagtca 18871412  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 48
Target Start/End: Original strand, 41384069 - 41384106
Alignment:
Q  11 cacagacaccagacacgacacaacacaacactgacacc 48  Q
    |||| ||| |||||||||||||||||||||||||||||    
T  41384069 cacatacatcagacacgacacaacacaacactgacacc 41384106  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 313 - 361
Target Start/End: Original strand, 26542361 - 26542409
Alignment:
Q  313 gacaccgataataatttaagaaaatagaagtgattatatgtagtcataa 361  Q
    ||||||| ||||||||| || ||||||||||||| ||||||| ||||||    
T  26542361 gacaccggtaataatttgagtaaatagaagtgatcatatgtaatcataa 26542409  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 50 - 95
Target Start/End: Complemental strand, 9537420 - 9537375
Alignment:
Q  50 ataatttgagaaaatagaagtgattgtatgtagtcacaagtgtcaa 95  Q
    |||||||||  |||||||||||||||| ||||||||||||||||||    
T  9537420 ataatttgatgaaatagaagtgattgtgtgtagtcacaagtgtcaa 9537375  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 94
Target Start/End: Complemental strand, 28131256 - 28131212
Alignment:
Q  50 ataatttgagaaaatagaagtgattgtatgtagtcacaagtgtca 94  Q
    ||||| |||||||||||||||||||||||||| ||| ||||||||    
T  28131256 ataatgtgagaaaatagaagtgattgtatgtaatcaaaagtgtca 28131212  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 50 - 81
Target Start/End: Original strand, 7541855 - 7541886
Alignment:
Q  50 ataatttgagaaaatagaagtgattgtatgta 81  Q
    ||||||||||||||||||||||||||||||||    
T  7541855 ataatttgagaaaatagaagtgattgtatgta 7541886  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 94
Target Start/End: Complemental strand, 3740082 - 3740038
Alignment:
Q  50 ataatttgagaaaatagaagtgattgtatgtagtcacaagtgtca 94  Q
    |||||||||||||||||||||||||||||||  | ||||||||||    
T  3740082 ataatttgagaaaatagaagtgattgtatgtcataacaagtgtca 3740038  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 52 - 94
Target Start/End: Complemental strand, 7259219 - 7259177
Alignment:
Q  52 aatttgagaaaatagaagtgattgtatgtagtcacaagtgtca 94  Q
    ||||| |||||||||||||||||||||||  ||||||||||||    
T  7259219 aatttaagaaaatagaagtgattgtatgtgatcacaagtgtca 7259177  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 318 - 348
Target Start/End: Complemental strand, 32931545 - 32931515
Alignment:
Q  318 cgataataatttaagaaaatagaagtgatta 348  Q
    |||||||||||||||||||||||||||||||    
T  32931545 cgataataatttaagaaaatagaagtgatta 32931515  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 319 - 347
Target Start/End: Original strand, 10338615 - 10338643
Alignment:
Q  319 gataataatttaagaaaatagaagtgatt 347  Q
    |||||||||||||||||||||||||||||    
T  10338615 gataataatttaagaaaatagaagtgatt 10338643  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 321 - 361
Target Start/End: Original strand, 43371333 - 43371373
Alignment:
Q  321 taataatttaagaaaatagaagtgattatatgtagtcataa 361  Q
    ||||||||||||||||||||||||| |||||||| ||||||    
T  43371333 taataatttaagaaaatagaagtgaatatatgtaatcataa 43371373  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 50 - 93
Target Start/End: Original strand, 28148336 - 28148379
Alignment:
Q  50 ataatttgagaaaatagaagtgattgtatgtagtcacaagtgtc 93  Q
    ||||||||| ||||||||||||||||||| || |||||||||||    
T  28148336 ataatttgataaaatagaagtgattgtatataatcacaagtgtc 28148379  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 93
Target Start/End: Complemental strand, 18903433 - 18903392
Alignment:
Q  52 aatttgagaaaatagaagtgattgtatgtagtcacaagtgtc 93  Q
    ||||||||||||||||||||||||| |||| | |||||||||    
T  18903433 aatttgagaaaatagaagtgattgtgtgtaattacaagtgtc 18903392  T

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