View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13023_low_4 (Length: 389)
Name: NF13023_low_4
Description: NF13023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13023_low_4 |
 | |
|
| [»] chr5 (2 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 366; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 1 - 389
Target Start/End: Complemental strand, 23096767 - 23096376
Alignment:
| Q |
1 |
agaagggatcgctgttgtgaggaagaaactgttgcatgatctgaaaatcgatacggatagattgaaagacacgattttgagaaaaggaatcatcgaagaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
23096767 |
agaagggatcgctgttgtgaggaagaaactgttgcatgatctgaaaatcgatacggatagattgaaagacacgattttgagaaaaggaataatcgaagaa |
23096668 |
T |
|
| Q |
101 |
gaaagcgatgaagaaagagagactttgaagtcgtggagtatgagaacgagaagaaaaacagagatcaaacaacgtgatttaccttctccggcgaaggttg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
23096667 |
gaaagcgatgaagaaagagagactttgaagtcgtggagtatgagaacgagaagaaaaacagagatcaaacaacgtgattcaccttctccggcgaaggttg |
23096568 |
T |
|
| Q |
201 |
aaagcaccgtaaccgtcgctgtcgccggcggcgagtacgtgtcatcgaggttgagaagtaacatcaatgtcaaaagtaata---ataagattgaaggaag |
297 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |
|
|
| T |
23096567 |
aaagcaccgtaaccgtcgctgtcgccggcggcgagtacgtgtcatcgaggttgagaagtaacatcaatgtcaaaagtaataataataagattgaaagaag |
23096468 |
T |
|
| Q |
298 |
gaaattttctgttcagcttttaacgaaggaaatcgaggaagatttcgtggcgtttatgggccgtgggcctcggaaaaggcccactaagaggc |
389 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23096467 |
gaaattttctgttcagcttttaacgaaggaaatcgaggaagatttcgtggcgtttatgggccgtgggcctcggaaaaggcccactaagaggc |
23096376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 298 - 389
Target Start/End: Complemental strand, 23128185 - 23128094
Alignment:
| Q |
298 |
gaaattttctgttcagcttttaacgaaggaaatcgaggaagatttcgtggcgtttatgggccgtgggcctcggaaaaggcccactaagaggc |
389 |
Q |
| |
|
|||||||||| ||||||| || | |||||||||||| ||||||||| ||| ||| | || || ||||||||||||||||||| ||||||| |
|
|
| T |
23128185 |
gaaattttctcttcagctcttgaggaaggaaatcgatgaagatttcatggtgttgacaggttgtcggcctcggaaaaggcccaccaagaggc |
23128094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 281 - 348
Target Start/End: Original strand, 6963429 - 6963498
Alignment:
| Q |
281 |
aataagattgaaggaaggaaattttctgttcagctttt--aacgaaggaaatcgaggaagatttcgtggc |
348 |
Q |
| |
|
|||||||||||| || ||||||||||||||| ||||| || |||||||||||||||||||||| |||| |
|
|
| T |
6963429 |
aataagattgaaagaccgaaattttctgttcacctttttcaaggaaggaaatcgaggaagatttcatggc |
6963498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University