View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13023_low_9 (Length: 248)
Name: NF13023_low_9
Description: NF13023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13023_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 216; Significance: 1e-119; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 14588323 - 14588092
Alignment:
| Q |
1 |
tgaagggttgaagtgttttgggtgttttgggcatttgatcaatgtttttaggggagtttatgaatgtgacagtgtgaccattttgagcaagaattttggc |
100 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14588323 |
tgaatggttgaagtgttttgggtgttttgggcatttgatcaatgtttttaggggagtttatgaatgtgacagtgtgaccattttgagcaagaattttggc |
14588224 |
T |
|
| Q |
101 |
taactcgaaaaaaggtagtatgtgtcccatagctagccatggcaccattacaacatgaagggacttgacattcttgttctcattctcatgattaacgatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
14588223 |
taactcgaaaaaaggtagtatgtgtcccatagctagccatggtaccattacaacatgaagggacttgacattcttgttctcattctcatgattaacaatt |
14588124 |
T |
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| Q |
201 |
gaagccatgggaaggttttgataaattagtta |
232 |
Q |
| |
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||||||||||||||||||||| |||||||||| |
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| T |
14588123 |
gaagccatgggaaggttttgaaaaattagtta |
14588092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 14621981 - 14621750
Alignment:
| Q |
1 |
tgaagggttgaagtgttttgggtgttttgggcatttgatcaatgtttttaggggagtttatgaatgtgacagtgtgaccattttgagcaagaattttggc |
100 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
14621981 |
tgaatggttgaagtgttttgggtgttttgggcatttgatcaatgtttttaggggagtttatgaacgtgacagtgtgaccattttgagcaagaattttggc |
14621882 |
T |
|
| Q |
101 |
taactcgaaaaaaggtagtatgtgtcccatagctagccatggcaccattacaacatgaagggacttgacattcttgttctcattctcatgattaacgatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
14621881 |
taactcgaaaaaaggtagtatgtgtcccatagctagccatggtaccattacaacatgaagggacttgacattcttgttctcattctcatgattaacaatt |
14621782 |
T |
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| Q |
201 |
gaagccatgggaaggttttgataaattagtta |
232 |
Q |
| |
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|||||||||||||||||||||||||||||||| |
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| T |
14621781 |
gaagccatgggaaggttttgataaattagtta |
14621750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 160
Target Start/End: Complemental strand, 12845857 - 12845698
Alignment:
| Q |
1 |
tgaagggttgaagtgttttgggtgttttgggcatttgatcaatgtttttaggggagtttatgaatgtgacagtgtgaccattttgagcaagaattttggc |
100 |
Q |
| |
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|||| |||||||| |||| || ||||| ||||| || ||||| ||||||||| ||||||||| || ||| |||||| |||||||||||||| ||||| |
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| T |
12845857 |
tgaatggttgaagaattttaggggtttttggcatgtggtcaatatttttagggctgtttatgaaggtaacatagtgacccttttgagcaagaatcttggc |
12845758 |
T |
|
| Q |
101 |
taactcgaaaaaaggtagtatgtgtcccatagctagccatggcaccattacaacatgaag |
160 |
Q |
| |
|
||||| ||| |||| |||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
12845757 |
caactcaaaataagggtatatgtgtcccatagctagccatggaaccattacaacatgaag |
12845698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 96; Significance: 3e-47; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 160
Target Start/End: Complemental strand, 20492035 - 20491876
Alignment:
| Q |
1 |
tgaagggttgaagtgttttgggtgttttgggcatttgatcaatgtttttaggggagtttatgaatgtgacagtgtgaccattttgagcaagaattttggc |
100 |
Q |
| |
|
|||| ||||||| || |||||||| |||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||| || |
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| T |
20492035 |
tgaatggttgaattgctttgggtgctttgggcatttgatcaatgtttttgggggagtttatgaaggtgacagtgtgacccttttgagcaagaatttttgc |
20491936 |
T |
|
| Q |
101 |
taactcgaaaaaaggtagtatgtgtcccatagctagccatggcaccattacaacatgaag |
160 |
Q |
| |
|
|||||||||| |||| |||||||||||||||||||| || | ||||||||||||||| |
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|
| T |
20491935 |
taactcgaaataagggtacatgtgtcccatagctagccaagggatcattacaacatgaag |
20491876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 15 - 160
Target Start/End: Complemental strand, 1354335 - 1354190
Alignment:
| Q |
15 |
gttttgggtgttttgggcatttgatcaatgtttttaggggagtttatgaatgtgacagtgtgaccattttgagcaagaattttggctaactcgaaaaaag |
114 |
Q |
| |
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|||||||||||||| |||||||| |||||||||||||||||||| ||||| |||||||||||||| ||| ||| ||||||||||||| || || ||| |
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| T |
1354335 |
gttttgggtgtttttggcatttggtcaatgtttttaggggagttgatgaaggtgacagtgtgaccctttgaagctagaattttggctacttcaaagtaag |
1354236 |
T |
|
| Q |
115 |
gtagtatgtgtcccatagctagccatggcaccattacaacatgaag |
160 |
Q |
| |
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| ||| |||||||||||||||||||| | |||||||| |||||| |
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| T |
1354235 |
ggtatatatgtcccatagctagccatgggagcattacaatatgaag |
1354190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 15 - 160
Target Start/End: Complemental strand, 1361221 - 1361076
Alignment:
| Q |
15 |
gttttgggtgttttgggcatttgatcaatgtttttaggggagtttatgaatgtgacagtgtgaccattttgagcaagaattttggctaactcgaaaaaag |
114 |
Q |
| |
|
|||||||||||||| |||||||| |||||||||||||||||||| ||||| |||||||||||||| ||| ||| ||||||||||||| || || ||| |
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| T |
1361221 |
gttttgggtgtttttggcatttggtcaatgtttttaggggagttgatgaaggtgacagtgtgaccctttgaagctagaattttggctacttcaaagtaag |
1361122 |
T |
|
| Q |
115 |
gtagtatgtgtcccatagctagccatggcaccattacaacatgaag |
160 |
Q |
| |
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| ||||||||||||||| |||||||| | |||||||| |||||| |
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| T |
1361121 |
ggtatatgtgtcccatagccagccatgggagcattacaatatgaag |
1361076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 84; Significance: 5e-40; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 160
Target Start/End: Original strand, 51370553 - 51370712
Alignment:
| Q |
1 |
tgaagggttgaagtgttttgggtgttttgggcatttgatcaatgtttttaggggagtttatgaatgtgacagtgtgaccattttgagcaagaattttggc |
100 |
Q |
| |
|
|||| ||||||| ||||||||||| ||| || ||||||||||||||||| || ||||| || || ||||||||||||||||||||||||||||||||||| |
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| T |
51370553 |
tgaatggttgaattgttttgggtggtttaggaatttgatcaatgtttttgggagagttgataaaggtgacagtgtgaccattttgagcaagaattttggc |
51370652 |
T |
|
| Q |
101 |
taactcgaaaaaaggtagtatgtgtcccatagctagccatggcaccattacaacatgaag |
160 |
Q |
| |
|
||||| ||| |||| |||| |||||||||||| |||||||| | |||| |||||||||| |
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|
| T |
51370653 |
caactcaaaataagggagtacgtgtcccatagcaagccatgggagcattgcaacatgaag |
51370712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 160
Target Start/End: Complemental strand, 29953900 - 29953741
Alignment:
| Q |
1 |
tgaagggttgaagtgttttgggtgttttgggcatttgatcaatgtttttaggggagtttatgaatgtgacagtgtgaccattttgagcaagaattttggc |
100 |
Q |
| |
|
|||| ||||||| ||||||||||| ||| || |||||||||||| || || ||| |||| |||||||||||||||| ||||||||||||||| ||||| |
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| T |
29953900 |
tgaatggttgaattgttttgggtggtttcggaatttgatcaatgattccgggagagcttataaatgtgacagtgtgacgattttgagcaagaatcttggc |
29953801 |
T |
|
| Q |
101 |
taactcgaaaaaaggtagtatgtgtcccatagctagccatggcaccattacaacatgaag |
160 |
Q |
| |
|
||||||||| |||| ||||||||||||||| || || || | |||||| |||||||| |
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|
| T |
29953800 |
caactcgaaataagggtatatgtgtcccatagcgagtcaagggagcattacgacatgaag |
29953741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 21 - 212
Target Start/End: Complemental strand, 11529845 - 11529654
Alignment:
| Q |
21 |
ggtgttttgggcatttgatcaatgtttttaggggagtttatgaatgtgacagtgtgaccattttgagcaagaattttggctaactcgaaaaaaggtagta |
120 |
Q |
| |
|
||||||||||| |||||||||||||||||||| ||| |||| || |||||||||||||| |||||||||||||||||||| || || ||| |||| || |
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| T |
11529845 |
ggtgttttgggaatttgatcaatgtttttaggagaggttattaaggtgacagtgtgacccttttgagcaagaattttggccaattcaaaataagggtata |
11529746 |
T |
|
| Q |
121 |
tgtgtcccatagctagccatggcaccattacaacatgaagggacttgacattcttgttctcattctcatgattaacgattgaagccatggga |
212 |
Q |
| |
|
||||||||||||||||||| || | |||| |||||||||| | |||| ||||| |||||||||| ||| |||| |||||| |||||||| |
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|
| T |
11529745 |
tgtgtcccatagctagccaagggagcattgcaacatgaagaggcttgctattctcattctcattcttatggttaataattgaatccatggga |
11529654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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