View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13024_high_11 (Length: 258)
Name: NF13024_high_11
Description: NF13024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13024_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 19 - 248
Target Start/End: Original strand, 46168138 - 46168368
Alignment:
| Q |
19 |
aacacacaattgcaattgaagataaacatgtagataaaaatagaagatcaaaatcacattctacggcgatatttgaacaataagtgtaattaagactann |
118 |
Q |
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| T |
46168138 |
aacacacaattgcaattgaagataaacatgtagataaaaatagaagatcaaaatcacattctacggcgatatttgaacaataagtgtaattaagactatt |
46168237 |
T |
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| Q |
119 |
nnnnnatgcaattaaaataattaaattgtgtgactaagtgatt-ctttaccaagtaacaacttccacaaagaaagcttccaattccaattccaccaagga |
217 |
Q |
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| T |
46168238 |
tttttatgcaattaaaataattaaattgtgtgactaagtgattcctttaccaagtaacaacttccacaaagaaagcttccaattccaattccaccaagga |
46168337 |
T |
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| Q |
218 |
accactttcatgatggaactgttgatctgtg |
248 |
Q |
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| T |
46168338 |
accactttcatgatggaactgttgatctgtg |
46168368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 199 - 240
Target Start/End: Original strand, 46161505 - 46161546
Alignment:
| Q |
199 |
attccaattccaccaaggaaccactttcatgatggaactgtt |
240 |
Q |
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| T |
46161505 |
attccaattccaccaaggaaccactttcatgatggaactgtt |
46161546 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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