View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13024_high_2 (Length: 515)
Name: NF13024_high_2
Description: NF13024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13024_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 480; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 19 - 498
Target Start/End: Complemental strand, 53395295 - 53394816
Alignment:
| Q |
19 |
cgtatatcactagctttttccataatgtaatccaaataagagtttaacaacaattgtttatcttttttcttgatacgaagagtgaaacctcgtttttcat |
118 |
Q |
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| T |
53395295 |
cgtatatcactagctttttccataatgtaatccaaataagagtttaacaacaattgtttatcttttttcttgatacgaagagtgaaacctcgtttttcat |
53395196 |
T |
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| Q |
119 |
ctggtaatggacgccatgaaaatgtttgagagtttctctgtgtgacaacatgttcccaaacaacgttaacgccgttaaacgtgtcgatgatgctgtcatt |
218 |
Q |
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| T |
53395195 |
ctggtaatggacgccatgaaaatgtttgagagtttctctgtgtgacaacatgttcccaaacaacgttaacgccgttaaacgtgtcgatgatgctgtcatt |
53395096 |
T |
|
| Q |
219 |
gttggcgagaccgaaagtgaaggcgcttgagttaacggcgcgtgttaagcttaaacgattcccggtgatggaaacggaggaacttaggtaaagctgaacc |
318 |
Q |
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| T |
53395095 |
gttggcgagaccgaaagtgaaggcgcttgagttaacggcgcgtgttaagcttaaacgattcccggtgatggaaacggaggaacttaggtaaagctgaacc |
53394996 |
T |
|
| Q |
319 |
gcgttgtagagttcgttggtgttaacgccgtcgatttcggttatttcgaagtaacagtaagatgagaaacagttgaagagtttgttgaaaagtttagcgg |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53394995 |
gcgttgtagagttcgttggtgttaacgccgtcgatttcggttatttcgaagtaacagtaagatgagaaacagttgaagagtttgttgaaaagtttagcgg |
53394896 |
T |
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| Q |
419 |
aagcgaaacggagttctggtggaaaaactgtttggaggattgtttgaaagaatgcaaatacaccaagaattgatgcaaga |
498 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53394895 |
aagcgaaacggagttctggtggaaaaactgtttggaggattgtttgaaagaatgcaaatacaccaagaattgatgcaaga |
53394816 |
T |
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