View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13024_high_3 (Length: 498)
Name: NF13024_high_3
Description: NF13024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13024_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 304; Significance: 1e-171; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 110 - 482
Target Start/End: Complemental strand, 34983274 - 34982890
Alignment:
| Q |
110 |
ttgataggtgcctaaaatggatcaaaacaaagtgtcaatatacaaagaataaaaccgtccaaaattcgtcgttacatattagcataaccaagataaagtg |
209 |
Q |
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| T |
34983274 |
ttgataggtgcctaaaatggatcaaaacaaagtgtcaatatacaaagaataaaaccgtccaaaattcgtcgttacatattagcataaccaagataaagtg |
34983175 |
T |
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| Q |
210 |
atagattagaccaccaagaaataggacagctaaatcatctgaagttgaacctaatattcttcttgaagacatatgcgcaccaccaaactaaaaagcatcg |
309 |
Q |
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| T |
34983174 |
acagattagaccaccaagaaataggacaactaaatcatctgaagttgaacctaatatccttcttgaagacatatgcgcaccaccaaactaaaaagcatcg |
34983075 |
T |
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| Q |
310 |
------------gctggatgaatggtagaaacacctgaccaactaaaaattaggcgccaagtaccactaaagaattaacaatccatgtagagatgattaa |
397 |
Q |
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| T |
34983074 |
gaaatgatatcagctggatgaatggtagaaacacctgaccaactaaaaattaggcgccaagtaccattaaagaattaacaatccatgtagaattgattaa |
34982975 |
T |
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| Q |
398 |
ttggtttctcttaactgaaactcttaacacatagcgagtcggaaggtattactccttgaagaatcaaactatcctttgtagtttt |
482 |
Q |
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| T |
34982974 |
ttggtttctcttgactgaaactcttaacacatagcgagtcagaaggtatcactccttgaagaatcaaactatcctttatagtttt |
34982890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 34983774 - 34983658
Alignment:
| Q |
1 |
attataaggatataattggaataacaagaaagtcaataattggaatacgtggataggtgagcttcttagtcacacaagaaacaataaaacatttatataa |
100 |
Q |
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| T |
34983774 |
attataaggatataattggaataacaagaaagtcaataattggaatacgttgataggttagcttcttagtcacacaagaaacaataaaacacttatataa |
34983675 |
T |
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| Q |
101 |
gggataacattgatagg |
117 |
Q |
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| T |
34983674 |
gggataacattgatagg |
34983658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 169 - 229
Target Start/End: Original strand, 13058869 - 13058929
Alignment:
| Q |
169 |
caaaattcgtcgttacatattagcataaccaagataaagtgatagattagaccaccaagaa |
229 |
Q |
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| T |
13058869 |
caaaattcgtcattacatattagcgtaatcaagacaaagtgatatattgaaccatcaagaa |
13058929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 312 - 400
Target Start/End: Complemental strand, 35465968 - 35465880
Alignment:
| Q |
312 |
tggatgaatggtagaaacacctgaccaactaaaaattaggcgccaagtaccactaaagaattaacaatccatgtagagatgattaattg |
400 |
Q |
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| T |
35465968 |
tggatgaacggtagaaacacccagccaaccaagaactagccgccaagtaccaccaaagaattcacaatccatgaagagatgattaattg |
35465880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 121 - 174
Target Start/End: Complemental strand, 29797986 - 29797932
Alignment:
| Q |
121 |
ctaaaatggatcaaaacaaagtgtcaatata-caaagaataaaaccgtccaaaat |
174 |
Q |
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| T |
29797986 |
ctaaaagggatcaaaacaaagtgtcagtatataaaagaataaaactgtccaaaat |
29797932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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