View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13024_high_4 (Length: 494)

Name: NF13024_high_4
Description: NF13024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13024_high_4
NF13024_high_4
[»] chr5 (1 HSPs)
chr5 (1-478)||(20746342-20746818)
[»] chr6 (1 HSPs)
chr6 (1-211)||(26908996-26909208)
[»] chr2 (2 HSPs)
chr2 (230-478)||(25815489-25815734)
chr2 (28-211)||(25809089-25809270)
[»] chr7 (1 HSPs)
chr7 (28-211)||(23068145-23068326)
[»] scaffold0011 (1 HSPs)
scaffold0011 (28-211)||(135753-135934)


Alignment Details
Target: chr5 (Bit Score: 405; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 1 - 478
Target Start/End: Original strand, 20746342 - 20746818
Alignment:
Q  1 atcaaaccccacttttcagaaccccatatctcattgaactccacttctcacaacccattgaaccccatctctcatctaatcccacgcatgcacccacaca 100  Q
    ||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20746342 atcaaaccccaatttttagaaccccatatctcattgaactccacttctcacaacccattgaaccccatctctcatctaatcccacgcatgcacccacaca 20746441  T
Q  101 ggtataatgcaatttcttaatttctttgatttatttatctcattgattttattaatcccaaaatctgagctgtttttcaatttcttgtaatacggttttg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20746442 ggtataatgcaatttcttaatttctttgatttatttatctcattgattttattaatcccaaaatctgagctgtttttcaatttcttgtaatacggttttg 20746541  T
Q  201 ttctctatttaattgaaaacaatttcttgtgaatttttgtgctggattgttttcaattgaatttttgaatctgcttggggtttgcctttcgcttccttca 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  20746542 ttctctatttaattgaaaacaatttcttgtgaatttttgtgctggattgttttcaattgaatttttgaatcggcttggggtttgcctttcgcttccttca 20746641  T
Q  301 gctgttttctaacaggnnnnnnnnngtccatgcagttcggtgttacnnnnnnntctgtgtatagcagtttttagactttcttgctgtttttccctcttgt 400  Q
    ||||||||||||||||         |||||||||||||||||||||       ||||||||||||||||||||| |||||||| ||||||||||||||||    
T  20746642 gctgttttctaacaggtttttttttgtccatgcagttcggtgttac-ggggggtctgtgtatagcagtttttaggctttcttgttgtttttccctcttgt 20746740  T
Q  401 atgctgggctattattttcctgctgtcaccattttttgttgctgtgatttcatcagtacgtaggggtgatctttttgg 478  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20746741 atgctgggctattattttcctgctgtcaccattttttgttgctgtgatttcatcagtacgtaggggtgatctttttgg 20746818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 26909208 - 26908996
Alignment:
Q  1 atcaaaccccacttttcagaaccccatatctc--attgaactccacttctcacaacccattgaaccccatctctcatctaatcccacgcatgcacccaca 98  Q
    ||||||||||||||||||||||||| ||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26909208 atcaaaccccacttttcagaaccccgtatctctcattgaactccacttctcacaacccattgaaccccatctctcatctaatcccacgcatgcacccaca 26909109  T
Q  99 caggtataatgcaatttcttaatttctttgatttatttatctcattgattttattaatcccaaaatctgagctgtttttcaatttcttgtaatacggttt 198  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  26909108 caggtataatgcaatttcttaatttctttgatttatttatctcattgattttattaatcccaaaatctgagctgtttttcaatttcttgtgatacggttt 26909009  T
Q  199 tgttctctattta 211  Q
    ||||||| |||||    
T  26909008 tgttctccattta 26908996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 145; Significance: 4e-76; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 230 - 478
Target Start/End: Original strand, 25815489 - 25815734
Alignment:
Q  230 tgaatttttgtgctggattgttttcaattgaatttttgaatctgcttggggtttgcctttcgcttccttcagctgttttctaacaggnnnnnnnnngtcc 329  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         || |    
T  25815489 tgaatttttgtgatggattgttttcaattgaatttttgaatctgcttggggtttgcctttcgcttccttcagctgttttctaacaggttttttt--gttc 25815586  T
Q  330 atgcagttcggtgt-tacnnnnnnntctgtgtatagcagtttttagactttcttgctgtttttccctcttgtatgctgggctattattttcctgctgtca 428  Q
    |||||||||||||| ||        ||||||||||| ||||||||| |||||||| ||||||||||||||||||| |||||||||||||||||| |||||    
T  25815587 atgcagttcggtgtgta--ggggggtctgtgtatagtagtttttaggctttcttgttgtttttccctcttgtatgttgggctattattttcctgttgtca 25815684  T
Q  429 ccattttttgttgctgtgatttcatcagtacgtaggggtgatctttttgg 478  Q
    |||||||||||||||||| ||||||||||||| |||||||||||||||||    
T  25815685 ccattttttgttgctgtgttttcatcagtacgcaggggtgatctttttgg 25815734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 28 - 211
Target Start/End: Original strand, 25809089 - 25809270
Alignment:
Q  28 atctcattgaactccacttctcacaacccattgaaccccatctctcatctaatcccacgcatgcacccacacaggtataatgcaatttcttaatttcttt 127  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||| ||  || |||||||||||||||||||||||  ||||| | |||||||||    
T  25809089 atctcattgaactccacttctcacaacccattgaaccc-atctctcatctcattacaagcatgcacccacacaggtataattgaatttttcaatttcttt 25809187  T
Q  128 gatttatttatctcattgattttattaatcccaaaatctgagctgtttttcaatttcttgtaatacggttttgttctctattta 211  Q
    ||||||||||| |||| ||||||||||||||||||||||||||||||| |||||||||||| ||||  |||||||| |||||||    
T  25809188 gatttatttatttcat-gattttattaatcccaaaatctgagctgtttgtcaatttcttgtgatactattttgttccctattta 25809270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 112; Significance: 2e-56; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 28 - 211
Target Start/End: Complemental strand, 23068326 - 23068145
Alignment:
Q  28 atctcattgaactccacttctcacaacccattgaaccccatctctcatctaatcccacgcatgcacccacacaggtataatgcaatttcttaatttcttt 127  Q
    |||| ||| ||||||||||||||||||||||||||||| ||||||||||| ||  || |||||||||||||||||||||||  ||||| | |||||||||    
T  23068326 atctaattaaactccacttctcacaacccattgaaccc-atctctcatctcattacaagcatgcacccacacaggtataattgaatttttcaatttcttt 23068228  T
Q  128 gatttatttatctcattgattttattaatcccaaaatctgagctgtttttcaatttcttgtaatacggttttgttctctattta 211  Q
    ||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| ||||  ||||||||||||||||    
T  23068227 gatttatttatttcat-gattttattaatcccaaaatctgagctgtttttcaatttcttgtgatactattttgttctctattta 23068145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 104; Significance: 1e-51; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 28 - 211
Target Start/End: Original strand, 135753 - 135934
Alignment:
Q  28 atctcattgaactccacttctcacaacccattgaaccccatctctcatctaatcccacgcatgcacccacacaggtataatgcaatttcttaatttcttt 127  Q
    |||| ||| ||||||||||||||||||||||||||||| ||||||||||| ||  || |||||||||||||||||||||||  ||||| | |||||||||    
T  135753 atctaattaaactccacttctcacaacccattgaaccc-atctctcatctcattacaagcatgcacccacacaggtataattgaatttttcaatttcttt 135851  T
Q  128 gatttatttatctcattgattttattaatcccaaaatctgagctgtttttcaatttcttgtaatacggttttgttctctattta 211  Q
    ||||||||||| |||| ||||||| ||||||||||||||||||||||||||||||| |||| ||||  ||||||||||||||||    
T  135852 gatttatttatttcat-gattttaataatcccaaaatctgagctgtttttcaattttttgtgatactattttgttctctattta 135934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University