View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13024_high_5 (Length: 421)
Name: NF13024_high_5
Description: NF13024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13024_high_5 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 349; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 10 - 407
Target Start/End: Complemental strand, 46167862 - 46167465
Alignment:
| Q |
10 |
aagaatatgcatgtacatcttaaacacgaatnnnnnnntaaaccttcaaattctaatcaacacctaaaccaagataaacacccacaaaaccaacataaac |
109 |
Q |
| |
|
||||| ||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
46167862 |
aagaaaatgcatgtacatcttaaacacgaataaaaaaataaacctccaaattctaatcaacacctaaaccaagataaacacccacaaaaccaacataaac |
46167763 |
T |
|
| Q |
110 |
caaaagttgattcaaaaccttacactccatcgtaaatgaccaaaaacaaaattcaaacacctatcgactacttttcacaccaaggtcgctccaaaaaacc |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
46167762 |
caaaagttgattcaaaaccttacactccatcgtaaatgaccacaaacaaaaatcaaacacctatcgactacttctcacaccaaggtcgctccaaaaaacc |
46167663 |
T |
|
| Q |
210 |
atcactcccactaaaacccctaacaacaacacctcaccttctcaagacagcaaacaacatcaatatagtaaaataaagtagtatttcatcaatatagtat |
309 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
46167662 |
atcactcccactaaaacccctaacaacaacagctcaccttctcaagacagcaaacaacatcaatatagtaaaataaagtagtatttcatcaatatagtat |
46167563 |
T |
|
| Q |
310 |
tctaaatgtgtgccctttagtaaggccattatttatttctatgaaaagcattcacatgcagcccatcatcaatttgtagagtaagcgaggttctatat |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
46167562 |
tctaaatgtgtgccctttagtaaggccattatttatttctgtgaaaagcattcacatgcagcccatcatcaatttgtagagtaagcgaggttctatat |
46167465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 279 - 407
Target Start/End: Complemental strand, 46161077 - 46160949
Alignment:
| Q |
279 |
aaaataaagtagtatttcatcaatatagtattctaaatgtgtgccctttagtaaggccattatttatttctatgaaaagcattcacatgcagcccatcat |
378 |
Q |
| |
|
|||||||||||||| |||||| ||||||||| ||||||| |||| |||||| |||||||||||||||||||||||||||||||||||||| |||| ||| |
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|
| T |
46161077 |
aaaataaagtagtaattcatccatatagtatggtaaatgtatgccatttagtgaggccattatttatttctatgaaaagcattcacatgcaacccaccat |
46160978 |
T |
|
| Q |
379 |
caatttgtagagtaagcgaggttctatat |
407 |
Q |
| |
|
||||||||||||| |||| |||||||||| |
|
|
| T |
46160977 |
caatttgtagagtgagcgtggttctatat |
46160949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 301 - 407
Target Start/End: Complemental strand, 46182819 - 46182713
Alignment:
| Q |
301 |
atatagtattctaaatgtgtgccctttagtaaggccattatttatttctatgaaaagcattcacatgcagcccatcatcaatttgtagagtaagcgaggt |
400 |
Q |
| |
|
||||||||| |||||||||||| ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||| ||| |
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|
| T |
46182819 |
atatagtatggtaaatgtgtgccatttagtaaggccattatttatttctgtgaaaagtattcacatgcagcccatcatcaatttgtagagtgagcatggt |
46182720 |
T |
|
| Q |
401 |
tctatat |
407 |
Q |
| |
|
||||||| |
|
|
| T |
46182719 |
tctatat |
46182713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 90 - 253
Target Start/End: Original strand, 2660564 - 2660731
Alignment:
| Q |
90 |
cccacaaaaccaacataaaccaaaagttgattcaaaaccttacactccatcgtaaatgaccaaa--aacaaaattcaaacacctatcgactacttttcac |
187 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| | ||||||||| || || | ||| | |||||||| ||||||| ||| ||||| |||| |
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|
| T |
2660564 |
cccacaaaaccaacataaaccaaaagttgcgccaaaatttcacactccattgtgaagggccacataaacaaaatccaaacactcatcacctactactcac |
2660663 |
T |
|
| Q |
188 |
accaaggtcgctccaaaaaaccatcactcccactaaaa--cccctaacaacaacacctcaccttctca |
253 |
Q |
| |
|
||||| | |||||||||||||| || |||||||||| |||||||||||| ||| ||||||||||| |
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|
| T |
2660664 |
accaaagctactccaaaaaaccattacacccactaaaacccccctaacaacagcacatcaccttctca |
2660731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 67 - 173
Target Start/End: Complemental strand, 8133751 - 8133643
Alignment:
| Q |
67 |
caacacctaaaccaagataaacacccacaaaaccaacataaaccaaaagttgattcaaaaccttac-actccatcgtaaatgac--caaaaacaaaattc |
163 |
Q |
| |
|
||||||| |||||||| ||| | |||||||| ||||||||||||||||||||| |||||||| || ||| |||| | |||| | |||||||||||||| |
|
|
| T |
8133751 |
caacaccaaaaccaagttaagcccccacaaa-ccaacataaaccaaaagttgagccaaaacctcacaacttcatcatgaatggccacaaaaacaaaattc |
8133653 |
T |
|
| Q |
164 |
aaacacctat |
173 |
Q |
| |
|
|||||||||| |
|
|
| T |
8133652 |
aaacacctat |
8133643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 223 - 253
Target Start/End: Complemental strand, 8133620 - 8133590
Alignment:
| Q |
223 |
aaacccctaacaacaacacctcaccttctca |
253 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
8133620 |
aaacccctaacaacaacacctcaccttctca |
8133590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 64 - 268
Target Start/End: Complemental strand, 28006973 - 28006767
Alignment:
| Q |
64 |
aatcaacacctaaaccaagataaacacccacaaaaccaacataaaccaaaagttgattcaaaaccttacactccatcgtaaatgaccaaa--aacaaaat |
161 |
Q |
| |
|
||||||||| |||||||| ||||| || | |||||||||||||||||| ||| |||||||||||||||| || | |||| ||| | |||||||| |
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|
| T |
28006973 |
aatcaacacgaaaaccaagttaaactcctatgcaaccaacataaaccaaaatgtgagccaaaaccttacactccctcatgaatggccacataaacaaaat |
28006874 |
T |
|
| Q |
162 |
tcaaacacctatcgactacttttcacaccaaggtcgctccaaaaaaccatcactcccactaaaacccctaacaacaacacctcaccttctcaagacagca |
261 |
Q |
| |
|
||||||||||||| | || ||||||||| | | ||| | |||| |||||| ||| || |||||||||||||||| ||||||||||||||| || || |
|
|
| T |
28006873 |
tcaaacacctatcacccgctactcacaccaaagccactcaagaaaatcatcacacccgctcaaacccctaacaacaatacctcaccttctcaacaccaca |
28006774 |
T |
|
| Q |
262 |
aacaaca |
268 |
Q |
| |
|
||||||| |
|
|
| T |
28006773 |
aacaaca |
28006767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 7e-16; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 49 - 173
Target Start/End: Complemental strand, 32057520 - 32057395
Alignment:
| Q |
49 |
aaaccttcaaattctaatcaacacctaaaccaagataaacacccacaaaaccaacataaaccaaaagttgattcaaaaccttacactccatcgtaaatga |
148 |
Q |
| |
|
|||||| |||| || |||||||||| |||| ||| ||||| || ||||| | ||||||||||||||||||| |||||||| |||||||||||| ||||| |
|
|
| T |
32057520 |
aaacctccaaaatcaaatcaacaccaaaactaagttaaaccccaacaaa-caaacataaaccaaaagttgaggcaaaacctcacactccatcgtgaatga |
32057422 |
T |
|
| Q |
149 |
c--caaaaacaaaattcaaacacctat |
173 |
Q |
| |
|
| | |||| |||||||||||| |||| |
|
|
| T |
32057421 |
caacgaaaataaaattcaaacaactat |
32057395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 75 - 253
Target Start/End: Complemental strand, 26475204 - 26475024
Alignment:
| Q |
75 |
aaaccaagataaacacccacaaaaccaacataaaccaaaagttgattcaaaaccttacactccatcgtaaatgacc--aaaaacaaaattcaaacaccta |
172 |
Q |
| |
|
|||||||| ||||| || ||||| ||||||||||||||||||| ||||| || |||||||||||| |||| || | || |||||| |||||||||| |
|
|
| T |
26475204 |
aaaccaagctaaacccctacaaactaaacataaaccaaaagttgagtcaaa--ctcacactccatcgtgaatggccatagaatcaaaatccaaacaccta |
26475107 |
T |
|
| Q |
173 |
tcgactacttttcacaccaaggtcgctc-caaaaaaccatcactcccact-aaaacccctaacaacaacacctcaccttctca |
253 |
Q |
| |
|
||| || | |||||| ||| | | ||| ||||||||| ||| |||||| |||| ||| |||||||||||||| ||||||| |
|
|
| T |
26475106 |
tcgcctgatattcacatcaaagccactctaaaaaaaccaacacacccactaaaaaacccaaacaacaacacctcgtcttctca |
26475024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 209 - 253
Target Start/End: Complemental strand, 32057347 - 32057303
Alignment:
| Q |
209 |
catcactcccactaaaacccctaacaacaacacctcaccttctca |
253 |
Q |
| |
|
|||||| |||||||||| |||||||||||| || ||||||||||| |
|
|
| T |
32057347 |
catcacacccactaaaatccctaacaacaaaacatcaccttctca |
32057303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 97 - 175
Target Start/End: Original strand, 15075033 - 15075113
Alignment:
| Q |
97 |
aaccaacataaaccaaaagttgattcaaaaccttacactccatcgtaaatgac--caaaaacaaaattcaaacacctatcg |
175 |
Q |
| |
|
||||||||||||||||||||| | ||||||||||||||| ||||||||| || || |||||||||||||||| |||||| |
|
|
| T |
15075033 |
aaccaacataaaccaaaagttcagccaaaaccttacactctatcgtaaataaccacataaacaaaattcaaacagctatcg |
15075113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 97 - 168
Target Start/End: Original strand, 15065736 - 15065809
Alignment:
| Q |
97 |
aaccaacataaaccaaaagttgattcaaaaccttacactccatcgtaaatgaccaaa--aacaaaattcaaaca |
168 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||| ||| ||||| |||| | ||||||||||||||| |
|
|
| T |
15065736 |
aaccaacataaaccaaaagttgagccaaaaccttacactctatcttaaataaccacattaacaaaattcaaaca |
15065809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 96 - 232
Target Start/End: Original strand, 24991707 - 24991844
Alignment:
| Q |
96 |
aaaccaacataaaccaaaagttgattcaaaaccttacactccatcgtaaatgacca--aaaacaaaattcaaacacctatcgactacttttcacaccaag |
193 |
Q |
| |
|
||||||||||||||||||||||| |||||| | || ||||| ||| |||| || |||||||||| |||| |||||||| | ||| ||||||||| |
|
|
| T |
24991707 |
aaaccaacataaaccaaaagttgc--caaaacatcaccctccaacgtgaatgggcacaaaaacaaaatccaaatacctatcgtccgcttctcacaccaaa |
24991804 |
T |
|
| Q |
194 |
gtcgctccaaaa-aaccatcactcccactaaaacccctaa |
232 |
Q |
| |
|
|||||||||| ||||||||| |||||| |||||||||| |
|
|
| T |
24991805 |
tccgctccaaaaaaaccatcacacccactgaaacccctaa |
24991844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 110 - 175
Target Start/End: Original strand, 35532759 - 35532827
Alignment:
| Q |
110 |
caaaagttgattcaaaaccttacac-tccatcgtaaatgac--caaaaacaaaattcaaacacctatcg |
175 |
Q |
| |
|
|||||||||| ||||||||| |||| ||||||||||||||| |||||| |||||||||||| |||||| |
|
|
| T |
35532759 |
caaaagttgagtcaaaacctcacacctccatcgtaaatgactacaaaaataaaattcaaacaactatcg |
35532827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 64 - 175
Target Start/End: Complemental strand, 12221043 - 12220932
Alignment:
| Q |
64 |
aatcaacacctaaaccaagataaacacccacaaaaccaacataaaccaaaagttgattcaaaaccttacactccatcgtaaatgac--caaaaacaaaat |
161 |
Q |
| |
|
|||||||||| |||||||| ||||| || ||||| ||||||||||||||||||| || || || ||| |||||| | |||||| |||||||||||| |
|
|
| T |
12221043 |
aatcaacaccaaaaccaagctaaacccctacaaactaaacataaaccaaaagttgagtc--aagctcacaatccatcttgaatgaccacaaaaacaaaat |
12220946 |
T |
|
| Q |
162 |
tcaaacacctatcg |
175 |
Q |
| |
|
||||||| ||||| |
|
|
| T |
12220945 |
ccaaacacatatcg |
12220932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 251
Target Start/End: Complemental strand, 17245986 - 17245933
Alignment:
| Q |
198 |
ctccaaaaaaccatcactcccactaaaacccctaacaacaacacctcaccttct |
251 |
Q |
| |
|
||||||||||||||||| | || ||||||||||||||| ||||||||||||| |
|
|
| T |
17245986 |
ctccaaaaaaccatcacatcgaccaaaacccctaacaacgtcacctcaccttct |
17245933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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