View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13024_high_9 (Length: 317)

Name: NF13024_high_9
Description: NF13024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13024_high_9
NF13024_high_9
[»] chr1 (5 HSPs)
chr1 (8-306)||(789696-789994)
chr1 (129-217)||(15642526-15642615)
chr1 (129-169)||(16756202-16756242)
chr1 (137-219)||(42297431-42297514)
chr1 (129-169)||(18428123-18428163)
[»] chr4 (2 HSPs)
chr4 (128-219)||(38766158-38766250)
chr4 (119-217)||(9012341-9012440)
[»] chr7 (4 HSPs)
chr7 (149-219)||(30614683-30614754)
chr7 (119-217)||(37339704-37339803)
chr7 (137-219)||(29059874-29059957)
chr7 (137-219)||(31492172-31492255)
[»] chr8 (3 HSPs)
chr8 (129-219)||(4125005-4125096)
chr8 (173-211)||(10544630-10544668)
chr8 (137-219)||(19715714-19715798)
[»] chr5 (1 HSPs)
chr5 (129-219)||(10591996-10592087)
[»] chr6 (1 HSPs)
chr6 (119-219)||(12836868-12836969)
[»] chr2 (1 HSPs)
chr2 (129-169)||(5394516-5394556)


Alignment Details
Target: chr1 (Bit Score: 242; Significance: 1e-134; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 8 - 306
Target Start/End: Complemental strand, 789994 - 789696
Alignment:
Q  8 ttgtgatttacaacttgaaatcttgaatttaaagtcatgacaaaggttgattaataaagacccctcnnnnnnngctaaaatttactaatttagaacttag 107  Q
    |||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||    
T  789994 ttgtgacttacaacttgaaatcttgaatttaaaatcatgacaaaggttgattaataaagacccctcaaaaaaagctaaaatttactaatttagaacttag 789895  T
Q  108 ggaagctattctttttcggcataaatcgagtattctccgcgcgcaactgccgagactaatcctcaagctttatgagacctaaataggcggcaaactttcc 207  Q
    |||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||    
T  789894 ggaagctattctttttcggcgtaaatcgagtattctccgcgtgcaactgccgagactaatcctcgagctttatgagacctaaataggcggtaaactttcc 789795  T
Q  208 ctaagcgttttagggcaccttcatgtccaagactgaattcaaacaaggatcgtagttaagctaaaagggacttgtgtcgtctcgtttaagcgctttcat 306  Q
    |||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  789794 ctaagcgttttaaggcacctgcatgtccaagactgaattcaaacaaggatcgtagttaagctaaaagggacttgtgtcgtctcgtttaagcgctctcat 789696  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 129 - 217
Target Start/End: Complemental strand, 15642615 - 15642526
Alignment:
Q  129 taaatcgagtattctccgcgcgcaactgccgagactaatc-ctcaagctttatgagacctaaataggcggcaaactttccctaagcgttt 217  Q
    ||||||| |||| |||||||||||||||| |||| ||||| ||| ||| || || |||| |||| ||||||||||| |||||||| ||||    
T  15642615 taaatcgggtatcctccgcgcgcaactgcggagaataatctctcgagcattgtgggacccaaatgggcggcaaactctccctaagagttt 15642526  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 129 - 169
Target Start/End: Complemental strand, 16756242 - 16756202
Alignment:
Q  129 taaatcgagtattctccgcgcgcaactgccgagactaatcc 169  Q
    |||||||||||| |||||||||||||||| |||||||||||    
T  16756242 taaatcgagtatcctccgcgcgcaactgcggagactaatcc 16756202  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 137 - 219
Target Start/End: Original strand, 42297431 - 42297514
Alignment:
Q  137 gtattctccgcgcgcaactgccgagactaat-cctcaagctttatgagacctaaataggcggcaaactttccctaagcgtttta 219  Q
    |||| |||||||||||||||| ||||||||| |||| ||| || ||||||| |||| | ||||| ||| |||||||| ||||||    
T  42297431 gtatcctccgcgcgcaactgcggagactaatccctcgagcattgtgagacccaaatggacggcagactctccctaagagtttta 42297514  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 129 - 169
Target Start/End: Original strand, 18428123 - 18428163
Alignment:
Q  129 taaatcgagtattctccgcgcgcaactgccgagactaatcc 169  Q
    ||||||| |||| |||||||||||||||| |||||||||||    
T  18428123 taaatcgggtatcctccgcgcgcaactgcagagactaatcc 18428163  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 128 - 219
Target Start/End: Complemental strand, 38766250 - 38766158
Alignment:
Q  128 ataaatcgagtattctccgcgcgcaactgccgagactaat-cctcaagctttatgagacctaaataggcggcaaactttccctaagcgtttta 219  Q
    |||||||| |||| |||||||||||||||| ||||||||| |||| ||| || ||||||| |||| ||||||| ||| |||||||| ||||||    
T  38766250 ataaatcgggtatcctccgcgcgcaactgcggagactaatccctcgagcattgtgagacccaaatgggcggcagactctccctaagagtttta 38766158  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 119 - 217
Target Start/End: Complemental strand, 9012440 - 9012341
Alignment:
Q  119 tttttcggcataaatcgagtattctccgcgcgcaactgccgagactaat-cctcaagctttatgagacctaaataggcggcaaactttccctaagcgttt 217  Q
    ||||| || |||||||| |||| |||||||||||||||| ||||||||| |||| ||| || || |||| || | |||||||| || |||||||| ||||    
T  9012440 tttttgggtataaatcgggtatcctccgcgcgcaactgcggagactaatccctcgagcattgtgggacccaagtgggcggcaagctctccctaagagttt 9012341  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 149 - 219
Target Start/End: Original strand, 30614683 - 30614754
Alignment:
Q  149 cgcaactgccgagactaat-cctcaagctttatgagacctaaataggcggcaaactttccctaagcgtttta 219  Q
    ||||||||||||||||||| ||||||||||| ||||||||||||  ||| |||||| || ||||| ||||||    
T  30614683 cgcaactgccgagactaattcctcaagctttctgagacctaaatgagcgacaaactctctctaagagtttta 30614754  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 119 - 217
Target Start/End: Original strand, 37339704 - 37339803
Alignment:
Q  119 tttttcggcataaatcgagtattctccgcgcgcaactgccgagactaat-cctcaagctttatgagacctaaataggcggcaaactttccctaagcgttt 217  Q
    ||||| || |||||||| |||| ||||| |||||||||| ||||||||| |||| ||| ||||| |||| |||||||||||| ||| || ||||| ||||    
T  37339704 ttttttggtataaatcgggtatcctccgtgcgcaactgcggagactaatccctcgagcattatgggacccaaataggcggcagactctcactaagagttt 37339803  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 137 - 219
Target Start/End: Complemental strand, 29059957 - 29059874
Alignment:
Q  137 gtattctccgcgcgcaactgccgagactaat-cctcaagctttatgagacctaaataggcggcaaactttccctaagcgtttta 219  Q
    |||| |||||||||||||||| ||||||||| |||||||| || || |||| |||| |||||||  || |||||||| ||||||    
T  29059957 gtatcctccgcgcgcaactgcggagactaatccctcaagcattgtgggacccaaatgggcggcaggctctccctaagagtttta 29059874  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 137 - 219
Target Start/End: Complemental strand, 31492255 - 31492172
Alignment:
Q  137 gtattctccgcgcgcaactgccgagactaat-cctcaagctttatgagacctaaataggcggcaaactttccctaagcgtttta 219  Q
    |||| |||||||||||||||| ||||||||| |||| ||| || || ||||||||| |||||||  || |||||||| ||||||    
T  31492255 gtatcctccgcgcgcaactgcggagactaatccctcgagcattgtgggacctaaatgggcggcaggctctccctaagagtttta 31492172  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 129 - 219
Target Start/End: Original strand, 4125005 - 4125096
Alignment:
Q  129 taaatcgagtattctccgcgcgcaactgccgagactaat-cctcaagctttatgagacctaaataggcggcaaactttccctaagcgtttta 219  Q
    ||||||| |||| |||||||||||||||| ||||||||| |||| ||| || || |||| |||| |||||||  || |||||||| ||||||    
T  4125005 taaatcgggtatcctccgcgcgcaactgcggagactaatccctcgagcattgtgggacccaaatgggcggcaggctctccctaagagtttta 4125096  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 211
Target Start/End: Complemental strand, 10544668 - 10544630
Alignment:
Q  173 agctttatgagacctaaataggcggcaaactttccctaa 211  Q
    |||||| |||||||||||||||||||||||| |||||||    
T  10544668 agctttgtgagacctaaataggcggcaaactctccctaa 10544630  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 219
Target Start/End: Original strand, 19715714 - 19715798
Alignment:
Q  137 gtattctccgcgcgcaactgccgagactaat--cctcaagctttatgagacctaaataggcggcaaactttccctaagcgtttta 219  Q
    ||||||||||||||||||||| |||||||||  |||| ||| || || |||| |||| |||||||| || ||||| || ||||||    
T  19715714 gtattctccgcgcgcaactgcggagactaatcccctcgagcattgtgggacccaaatgggcggcaagctctccctgagagtttta 19715798  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 129 - 219
Target Start/End: Complemental strand, 10592087 - 10591996
Alignment:
Q  129 taaatcgagtattctccgcgcgcaactgccgagactaat-cctcaagctttatgagacctaaataggcggcaaactttccctaagcgtttta 219  Q
    ||||||| |||| |||||||||||||||| ||||||||| |||| ||| || || |||  |||| ||||||| ||| |||||||| ||||||    
T  10592087 taaatcgggtatcctccgcgcgcaactgcagagactaatccctcgagcattgtgggactcaaatgggcggcagactctccctaagagtttta 10591996  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 219
Target Start/End: Original strand, 12836868 - 12836969
Alignment:
Q  119 tttttcggcataaatcgagtattctccgcgcgcaactgccgagactaat-cctcaagctttatgagacctaaataggcggcaaactttccctaagcgttt 217  Q
    ||||| || ||||| || |||| |||||||||||||||  ||||||||| |||||||| || || |||| |||| |||||| | || |||||||| ||||    
T  12836868 tttttgggtataaaccgggtatcctccgcgcgcaactggggagactaatccctcaagcattgtgggacccaaatgggcggcgagctctccctaagagttt 12836967  T
Q  218 ta 219  Q
    ||    
T  12836968 ta 12836969  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 129 - 169
Target Start/End: Complemental strand, 5394556 - 5394516
Alignment:
Q  129 taaatcgagtattctccgcgcgcaactgccgagactaatcc 169  Q
    |||||||||||| ||||||| |||||||| |||||||||||    
T  5394556 taaatcgagtatcctccgcgtgcaactgcggagactaatcc 5394516  T

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