View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13024_low_1 (Length: 613)
Name: NF13024_low_1
Description: NF13024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13024_low_1 |
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| [»] scaffold0386 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 518; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 518; E-Value: 0
Query Start/End: Original strand, 12 - 581
Target Start/End: Original strand, 6067971 - 6068540
Alignment:
| Q |
12 |
atgaaggaatactataacaaaaagttaaaccttgtgttgaagaagcttaagtatacttgtatttagtcctgttgaaaaagacttcaatggattagcctta |
111 |
Q |
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| T |
6067971 |
atgaaggaatactataacaaaaagttaaaccttgtgttgaagaagcttaagtatacttgtatttagtcctgttgaaaaagacttcaatggattagcctta |
6068070 |
T |
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| Q |
112 |
tgcattctaagaaaatgtataaaagataaagaaatgtttagtcttctaggatacaaagtaatcagaggcatctaatgtaaaacacatttgtatgcacaaa |
211 |
Q |
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| T |
6068071 |
tgcattctaagaaaatgcataaaagataaagaaatgtttagtcttctaggatacaaagtaatcagagacatctaatgtaaaacacatttgtatgcacaaa |
6068170 |
T |
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| Q |
212 |
attagtcaaaagacccgcggcaaatacatataattgagtcccttaagcatggaaaatttcttgctggaaaaggaaaattccatgttagtgatctctacgc |
311 |
Q |
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| T |
6068171 |
attagtcaaaagacccgcggcaaatacatataattgagtcccttaagcatggaaaatttcttgttggaataggaaaattccatgttagtgttctctacgc |
6068270 |
T |
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| Q |
312 |
ctcgaagaggattttgtctctcgctcgctaccactgtcttagaagttcttttccagtgattcatggttcccctagaagtgatataatcataagaatgtgc |
411 |
Q |
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| T |
6068271 |
ctcgaagaggattttgtctctcgctcgctaccactgtcttagaagttcttttccagtgattcatggttcccctagaagtgatataatcataagaatgtgc |
6068370 |
T |
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| Q |
412 |
aaatagctaccggtcggcaatatatagaacacatattttctttaatcttagtcgaatgcgtgtcatgtcttctaaaaactagctataatattagttggta |
511 |
Q |
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| T |
6068371 |
aaatagttactggtcggcaatatatagaacacatattttctttaatcttagtcgaatgcatgtcccgtcttctaaaaaccagctataatattagttggta |
6068470 |
T |
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| Q |
512 |
gataaaatatatgtgttgcacgaaaacacaaattctttaaacaagttctatatagagcttgaagaggtaa |
581 |
Q |
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| T |
6068471 |
gataaaatatatgtgttgcacgaaaacacaaattctttaaacatgttctatatagagcttcaagaggtaa |
6068540 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0386 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 2)
Name: scaffold0386
Description:
Target: scaffold0386; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 444 - 510
Target Start/End: Original strand, 15799 - 15865
Alignment:
| Q |
444 |
atattttctttaatcttagtcgaatgcgtgtcatgtcttctaaaaactagctataatattagttggt |
510 |
Q |
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| T |
15799 |
atattttctttaatcttagtcgaatgcatgtcctctcctttaaaaactagctataatattaattggt |
15865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0386; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 276 - 328
Target Start/End: Original strand, 15641 - 15693
Alignment:
| Q |
276 |
tggaaaaggaaaattccatgttagtgatctctacgcctcgaagaggattttgt |
328 |
Q |
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| T |
15641 |
tggaataggcaaattccatgttagtgatctctaagcctagaggaggattttgt |
15693 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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