View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13024_low_10 (Length: 303)
Name: NF13024_low_10
Description: NF13024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13024_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 18 - 222
Target Start/End: Complemental strand, 24079332 - 24079131
Alignment:
| Q |
18 |
aaatcaagagaaggatctcgagtccaaagagaaattttatcaagtacgagccaacctatgtaagtatttcatgtcaaatgacacttattcatctgaatca |
117 |
Q |
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| T |
24079332 |
aaatcaagagaaggatctcgagtccaaagagaaattttatcaagtacgagccaacctatgtaagtatttcatgtcaaatgacacttattcatctgaatca |
24079233 |
T |
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| Q |
118 |
actgtatgatgcaataataatacggaaaaagtgttgaaactaagcatcttgttagaacttaaacctgcattgattctaccacttccatgtattacattgt |
217 |
Q |
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| T |
24079232 |
actgtatgatgcaat---aatacggaaaaagtgttgaaactaagcatcttgttagaacttaaacctgcattgattctaccacttccatgtattacattgt |
24079136 |
T |
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| Q |
218 |
tttgt |
222 |
Q |
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||||| |
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| T |
24079135 |
tttgt |
24079131 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 214 - 291
Target Start/End: Complemental strand, 24079116 - 24079038
Alignment:
| Q |
214 |
ttgttttgtattcataccttattctctcatta-tctttatattatatgatatctgattcagctattgcattatgatgat |
291 |
Q |
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| T |
24079116 |
ttgttttgtattcatactttattctctcattaatctttatattatatgatatctgattcagctattgcattatgatgat |
24079038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 134
Target Start/End: Original strand, 7893672 - 7893714
Alignment:
| Q |
92 |
caaatgacacttattcatctgaatcaactgtatgatgcaataa |
134 |
Q |
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|||||| ||||||||||| | |||||||||||||||||||||| |
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| T |
7893672 |
caaatgccacttattcatgtcaatcaactgtatgatgcaataa |
7893714 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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