View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13024_low_13 (Length: 255)
Name: NF13024_low_13
Description: NF13024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13024_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 147; Significance: 1e-77; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 53431024 - 53430790
Alignment:
| Q |
1 |
taaatgcagcaactcaagttaacaatttgaagggtcccattacaacagagttagggtcgattgccacaccttatgactatggagcaggggaaataacacc |
100 |
Q |
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| T |
53431024 |
taaattcagcaactcaagttaacaacttgaaggatcccattacaacagatttagggtcgattgccacaccttatgactatggagcaggtgaaataacacc |
53430925 |
T |
|
| Q |
101 |
aaccgaatcattccaaccagggctagtttatgaaaccagcatcattgactacttgaacttcttgtgttacatgggatacaatacaaccacgatcaaggtt |
200 |
Q |
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| T |
53430924 |
aactgaatcataccgaccaggtcttgtttatgaaaccagcaccattgactacttgaacttcttgtgttacataggatataacacaacaactattaaggtt |
53430825 |
T |
|
| Q |
201 |
atctcagaaaccgtccctgatagtttcagctgccc |
235 |
Q |
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|| ||| |||| |||||||||| ||||| |||||| |
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| T |
53430824 |
atttcaaaaactgtccctgataatttcaactgccc |
53430790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 2 - 235
Target Start/End: Complemental strand, 53423061 - 53422827
Alignment:
| Q |
2 |
aaatgcagcaactcaagttaacaatttgaagggtcccattacaacagagttagggtcgattgccacaccttatgactatggagcaggggaaataacacca |
101 |
Q |
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|||||||||||||||| |||||||| |||||| |||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||| ||| | |
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| T |
53423061 |
aaatgcagcaactcaaattaacaatatgaaggatcccattacaacggatttagggtcaattgccacaccttatgactatggagcaggggaaattacaata |
53422962 |
T |
|
| Q |
102 |
accgaatcattccaaccagggctagtttatgaaaccagcatcattgactacttgaacttcttgtgttacatgggatacaatacaa-ccacgatcaaggtt |
200 |
Q |
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| T |
53422961 |
tctgaatcattccaaccagggctagtttatgaaaccagcaccattgactacttgaactacttgtgttacctaggatacaatacaacccacaattaaggct |
53422862 |
T |
|
| Q |
201 |
atctcagaaaccgtccctgatagtttcagctgccc |
235 |
Q |
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| T |
53422861 |
atctcaaaaaccgtccctggtagtttcagttgccc |
53422827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 26095411 - 26095177
Alignment:
| Q |
1 |
taaatgcagcaactcaagttaacaatttgaagggtcccattacaacagagttagggtcgattgccacaccttatgactatggagcaggggaaataacacc |
100 |
Q |
| |
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||||||||||||||||| |||||||| |||||||||||||| ||||||| ||||||| |||||||||||||||||||||||||| |||| |||||| | |
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| T |
26095411 |
taaatgcagcaactcaaattaacaatatgaagggtcccattgcaacagatttagggttaattgccacaccttatgactatggagctggggggataacaac |
26095312 |
T |
|
| Q |
101 |
aaccgaatcattccaaccagggctagtttatgaaaccagcatcattgactacttgaacttcttgtgttacatgggatacaatacaaccacgatcaaggtt |
200 |
Q |
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| T |
26095311 |
aactgaaccactccaaccagggctcgtttatgaaaccagcaccattgactacttgaacttcttgtgttatataggatataacacaaccaccattaaggtt |
26095212 |
T |
|
| Q |
201 |
atctcagaaaccgtccctgatagtttcagctgccc |
235 |
Q |
| |
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|| ||| |||| |||||||||||||||| |||||| |
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| T |
26095211 |
atttcaaaaactgtccctgatagtttcaactgccc |
26095177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 4 - 236
Target Start/End: Original strand, 48374795 - 48375027
Alignment:
| Q |
4 |
atgcagcaactcaagttaacaatttgaagggtcccattacaacagagttagggtcgattgccacaccttatgactatggagcaggggaaataacaccaac |
103 |
Q |
| |
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|||||||||| ||| |||| ||| |||||| ||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||| |||||| ||| |
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| T |
48374795 |
atgcagcaacacaaattaataatatgaaggctcccattactacagatttagggtcagttgccacaccttatgactatggagcaggggacataacaacaat |
48374894 |
T |
|
| Q |
104 |
cgaatcattccaaccagggctagtttatgaaaccagcatcattgactacttgaacttcttgtgttacatgggatacaatacaaccacgatcaaggttatc |
203 |
Q |
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||||||||||||||||| || ||||||||||| |||| ||||||||||||||| | |||||||||||| |||||||| |||||||| || |||||||| |
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| T |
48374895 |
tgaatcattccaaccaggtctcgtttatgaaactagcaccattgactacttgaattacttgtgttacataggatacaacacaaccactattaaggttatt |
48374994 |
T |
|
| Q |
204 |
tcagaaaccgtccctgatagtttcagctgcccc |
236 |
Q |
| |
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||| |||| |||||||||| ||||| ||||||| |
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| T |
48374995 |
tcaaaaactgtccctgatactttcaactgcccc |
48375027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 53307864 - 53307629
Alignment:
| Q |
1 |
taaatgcagcaactcaagttaacaatttgaagggtcccattacaacagagttagggtcgattgccacaccttatgactatggagcaggggaaataacacc |
100 |
Q |
| |
|
||||||||||| ||||| |||||||| |||||| ||||||||| || | || ||||| ||||||||||||||||||||||||||||| ||||||||| | |
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| T |
53307864 |
taaatgcagcagctcaaattaacaatatgaaggctcccattaccacgaatttggggtcaattgccacaccttatgactatggagcaggagaaataacaac |
53307765 |
T |
|
| Q |
101 |
aaccgaatcattccaaccagggctagtttatgaaaccagcatcattgactacttgaacttcttgtgttacatgggatacaatacaaccacgatcaaggtt |
200 |
Q |
| |
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||| ||| |||||||||| ||||||||||||||||| |||| |||||||||| | |||| |||||||||||| |||| |||||||||||| | ||| || |
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| T |
53307764 |
aactgaaccattccaacccgggctagtttatgaaactagcaccattgactacctaaactacttgtgttacataggattgaatacaaccacggtgaagatt |
53307665 |
T |
|
| Q |
201 |
atctcagaaaccgtccctgatagtttcagctgcccc |
236 |
Q |
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||||| |||||| |||||||||||||| ||||||| |
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| T |
53307664 |
atctctaaaaccgcccctgatagtttcaactgcccc |
53307629 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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