View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13024_low_6 (Length: 379)
Name: NF13024_low_6
Description: NF13024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13024_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 13 - 363
Target Start/End: Complemental strand, 29662384 - 29662033
Alignment:
| Q |
13 |
atcatcatacaaactcaatccaactcctcacatttactacacaaaaatagccacaaaacaaatatatatatcatcaataacactaggcaaagagaattta |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29662384 |
atcatcatacaaactcaatccaactcctcacatttactacacaaaaatagccacaaaacaaatatatatatcatcaataacactaggcaaagagaattta |
29662285 |
T |
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| Q |
113 |
tattatattttagttt-ctagttgatataatttttcaaattaagctaggagaattaatggcttctatcaccatgttgccaatggttccaacaacaggaag |
211 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
29662284 |
tattatattttagttttctagttgatataatttttcaaattaagctaggagaattaatggcttctatcaccatgttgccaatggttccaacaacgggaag |
29662185 |
T |
|
| Q |
212 |
agtctttgcagctacaggtgcaaagggtactacaggtggtggcagtagcaagcaagagaaaggtttttgggattggattgttggtggtttaacaaaagaa |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29662184 |
agtctttgcagctacaggtgcaaagggtactacaggtggtggcagtagcaagcaagagaaaggtttttgggattggattgttggtggtttaacaaaagaa |
29662085 |
T |
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| Q |
312 |
gatcagttctatgaaactgatcctattctcaagaaggttgaagagaagaata |
363 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29662084 |
gatcagttctatgaaactgatcctattctcaagaaggttgaagagaagaata |
29662033 |
T |
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