View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13024_low_7 (Length: 363)
Name: NF13024_low_7
Description: NF13024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13024_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 9 - 348
Target Start/End: Original strand, 34864665 - 34865005
Alignment:
| Q |
9 |
cacagagaagccaatccatttctctctgccacttttctttcttttcacaaggtacaggttccagtctccataattgtccaaatacagttcctacatgttg |
108 |
Q |
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| T |
34864665 |
cacaaagaagccaatccatttctctctgccacttttctttcttttcacaaggtacaggttccagtctccataattgtccaaatacagttcctacatgttg |
34864764 |
T |
|
| Q |
109 |
caacaaatcccaattgaacaaattgtaagaaaaatattaaaattgaaaccataacacaacatttgtatcattttccatccaagaaaaagtaatattttct |
208 |
Q |
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| T |
34864765 |
caacaaatcccaattgaacaaattgtaagaaaaatattaaaattgaaaccataacacaacatttgtatcattttccatctaagaaaaagtaatattttct |
34864864 |
T |
|
| Q |
209 |
ctaatacagcttaattctatatcactatgtgttac-nnnnnnnnnnnnnnntaccacaaagattagtaatagcatttgagatagccaaagcagtgctaac |
307 |
Q |
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| T |
34864865 |
ctaatacagcttaattctatatcactatgtgttacaaaaaaaaaaaaaaaataccacaaagattagtaatagcatttgagatagccaaagcagtgctaac |
34864964 |
T |
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| Q |
308 |
tccttttccagaccctgacatatcttcaccaagcagtaact |
348 |
Q |
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| T |
34864965 |
tccttttccagaccctgacatatcttcaccaagcagtaact |
34865005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 259 - 342
Target Start/End: Original strand, 31130653 - 31130736
Alignment:
| Q |
259 |
taccacaaagattagtaatagcatttgagatagccaaagcagtgctaactccttttccagaccctgacatatcttcaccaagca |
342 |
Q |
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||||||||||||||||||| ||||| ||||| ||||||||||||| ||| |||||||| || |||||||||||||||||||||| |
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| T |
31130653 |
taccacaaagattagtaatggcattagagattgccaaagcagtgcaaaccccttttcctgaacctgacatatcttcaccaagca |
31130736 |
T |
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