View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13025_high_2 (Length: 291)

Name: NF13025_high_2
Description: NF13025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13025_high_2
NF13025_high_2
[»] chr1 (3 HSPs)
chr1 (13-272)||(10660300-10660559)
chr1 (48-96)||(10468031-10468079)
chr1 (48-92)||(6152599-6152643)
[»] chr8 (2 HSPs)
chr8 (48-118)||(41194835-41194905)
chr8 (48-96)||(29444909-29444957)
[»] chr7 (1 HSPs)
chr7 (54-118)||(12017119-12017183)
[»] chr3 (1 HSPs)
chr3 (55-99)||(50545574-50545618)
[»] chr2 (3 HSPs)
chr2 (51-99)||(10590916-10590964)
chr2 (49-93)||(30978278-30978322)
chr2 (48-85)||(15041171-15041208)
[»] chr4 (1 HSPs)
chr4 (52-111)||(8290547-8290606)
[»] chr6 (2 HSPs)
chr6 (48-118)||(11094120-11094190)
chr6 (48-76)||(3182783-3182811)
[»] chr5 (1 HSPs)
chr5 (48-124)||(18985310-18985387)


Alignment Details
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 13 - 272
Target Start/End: Complemental strand, 10660559 - 10660300
Alignment:
Q  13 aatatataaagggaacatcaacttttggcatcttgtttttctttcaattttaccattcacttaaactattttatttataattttgtcattctttatccaa 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  10660559 aatatataaagggaacatcaacttttggcatcttgtttttctttcaattctaccattcatttaaactattttatttataattttgtcattctttatccaa 10660460  T
Q  113 tcaaatcattgannnnnnnngtacctatatataaagggatacaaacttctagtgtcactctattttattccaatttcaatattcaattttacttacaatt 212  Q
    ||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10660459 tcaaatcattgattttttttgtacctatatataaagggatacaaacttctagtgtcactctattttattccaatttcaatattcaattttacttacaatt 10660360  T
Q  213 ttgtccattacccaatcaatgaggaaaaaagaagaccaaaaagcagatagatagacacat 272  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  10660359 ttgtccattacccaatcaatgagaaaaaaagaagaccaaaaagcagatagatagacacat 10660300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 48 - 96
Target Start/End: Complemental strand, 10468079 - 10468031
Alignment:
Q  48 tttttctttcaattttaccattcacttaaactattttatttataatttt 96  Q
    ||||||||||||||||| |||||||||||||| ||||||||| ||||||    
T  10468079 tttttctttcaattttatcattcacttaaacttttttatttacaatttt 10468031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 92
Target Start/End: Complemental strand, 6152643 - 6152599
Alignment:
Q  48 tttttctttcaattttaccattcacttaaactattttatttataa 92  Q
    |||||||||||| |||||| || ||||||||||||||||||||||    
T  6152643 tttttctttcaactttaccgttaacttaaactattttatttataa 6152599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 48 - 118
Target Start/End: Original strand, 41194835 - 41194905
Alignment:
Q  48 tttttctttcaattttaccattcacttaaactattttatttataattttgtcattctttatccaatcaaat 118  Q
    |||||||| || |||||||||||| ||||| ||||||||||| |||||| |||||||||||||||| ||||    
T  41194835 tttttcttgcatttttaccattcatttaaattattttatttacaattttatcattctttatccaattaaat 41194905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 48 - 96
Target Start/End: Complemental strand, 29444957 - 29444909
Alignment:
Q  48 tttttctttcaattttaccattcacttaaactattttatttataatttt 96  Q
    ||||||||||||||||| | || ||||||| | ||||||||||||||||    
T  29444957 tttttctttcaattttatcctttacttaaagtgttttatttataatttt 29444909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 54 - 118
Target Start/End: Original strand, 12017119 - 12017183
Alignment:
Q  54 tttcaattttaccattcacttaaactattttatttataattttgtcattctttatccaatcaaat 118  Q
    ||||||||||  | |||| ||||||||||||||||| ||||||||| ||||||| ||||||||||    
T  12017119 tttcaattttttctttcatttaaactattttatttacaattttgtccttctttacccaatcaaat 12017183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 55 - 99
Target Start/End: Complemental strand, 50545618 - 50545574
Alignment:
Q  55 ttcaattttaccattcacttaaactattttatttataattttgtc 99  Q
    ||||||||||||||| | |||||||||| ||||||||||||||||    
T  50545618 ttcaattttaccatttatttaaactattgtatttataattttgtc 50545574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 99
Target Start/End: Complemental strand, 10590964 - 10590916
Alignment:
Q  51 ttctttcaattttaccattcacttaaactattttatttataattttgtc 99  Q
    |||||||||||||||  || | |||||||||||||||||||||||||||    
T  10590964 ttctttcaattttactctttatttaaactattttatttataattttgtc 10590916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 93
Target Start/End: Original strand, 30978278 - 30978322
Alignment:
Q  49 ttttctttcaattttaccattcacttaaactattttatttataat 93  Q
    ||||||||||||||||||||||| ||||| ||||||| |||||||    
T  30978278 ttttctttcaattttaccattcatttaaattattttaattataat 30978322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 85
Target Start/End: Complemental strand, 15041208 - 15041171
Alignment:
Q  48 tttttctttcaattttaccattcacttaaactatttta 85  Q
    |||||||||||||||||||||| | |||||||||||||    
T  15041208 tttttctttcaattttaccatttatttaaactatttta 15041171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 52 - 111
Target Start/End: Original strand, 8290547 - 8290606
Alignment:
Q  52 tctttcaattttaccattcacttaaactattttatttataattttgtcattctttatcca 111  Q
    ||||||| |||||||||| | | ||||||| ||||||| |||||||| ||||||||||||    
T  8290547 tctttcatttttaccatttattcaaactatgttatttacaattttgttattctttatcca 8290606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 118
Target Start/End: Original strand, 11094120 - 11094190
Alignment:
Q  48 tttttctttcaattttaccattcacttaaactattttatttataattttgtcattctttatccaatcaaat 118  Q
    |||||||| |||||||||| || | |||||||||||||||| ||| ||| || ||||||  ||||||||||    
T  11094120 tttttcttccaattttacccttaatttaaactattttatttttaaatttttcgttcttttgccaatcaaat 11094190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 48 - 76
Target Start/End: Original strand, 3182783 - 3182811
Alignment:
Q  48 tttttctttcaattttaccattcacttaa 76  Q
    |||||||||||||||||||||||||||||    
T  3182783 tttttctttcaattttaccattcacttaa 3182811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 124
Target Start/End: Complemental strand, 18985387 - 18985310
Alignment:
Q  48 tttttctttcaattttaccattcacttaaactatttt-atttataattttgtcattctttatccaatcaaatcattga 124  Q
    |||||||| |||||||| | || | |||||||||||| |||||||||||||| ||| |||| ||| |||||| |||||    
T  18985387 tttttcttccaattttatcttttatttaaactatttttatttataattttgttattgtttacccagtcaaataattga 18985310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University