View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13025_low_1 (Length: 443)
Name: NF13025_low_1
Description: NF13025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13025_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 330; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 16 - 425
Target Start/End: Complemental strand, 23644341 - 23643933
Alignment:
| Q |
16 |
atcatcatccgttatacaattgataagctctaaagtagataaagagaatataataatattaatagattgagataaaatattgtgtatgaacaaaaaa--c |
113 |
Q |
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| T |
23644341 |
atcatcatccgttatacaattgataagctctaaagtagataaagagaatataataatattaataaaatgagataaaatattgtgtatgaacaaaaaaaac |
23644242 |
T |
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| Q |
114 |
taaagaagaacatttaaaaaggacgnnnnnnntagcttaccaccgtcaacgttcattacaacaagaaatatggaaagaaatataattatggaataaatat |
213 |
Q |
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| T |
23644241 |
taaataa---catttaaaaaggacaaaaaaaatagcttaccaccgtcaacgttcattacaacaagaaatatggaaagaaatataattatggaataaatat |
23644145 |
T |
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| Q |
214 |
tcttaagagttttagccatatttttcctgtctttacatgtaactaatagaacatagtttgctcactttatagtgtgttaagcgcatgttgtgcttgaaat |
313 |
Q |
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| T |
23644144 |
tcttaagagttttagccatatttttcctgtctttacatgtaactaatagaacatagtttgctcactttatagtgtgttaagcgcatgttgtgcttgaaat |
23644045 |
T |
|
| Q |
314 |
aatcaaatatttttagcatttaaggagttgttaaaaacctctgcaaatttaaaatatttattaaatgtctcttatgtatattgatgtgttgagtttgtcc |
413 |
Q |
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| T |
23644044 |
aatcaaatatttttagcatttaaggagttcttaaaaacctctgcaaatttaaaatacttattaaatgtcacttaagtatattgatgtgttgtgtttgtcc |
23643945 |
T |
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| Q |
414 |
cttaagaacatt |
425 |
Q |
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| T |
23643944 |
cttaagaacatt |
23643933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 146 - 404
Target Start/End: Complemental strand, 23654001 - 23653743
Alignment:
| Q |
146 |
tagcttaccaccgtcaacgttcattacaacaagaaatatggaaagaaatataattatggaataaatattcttaagagttttagccatatttttcctgtct |
245 |
Q |
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| T |
23654001 |
tagcttaccaccgtcaacgttcattacaacaagaaatggagaaagaaatataattatagaataaataaacttgaatgttttaaccatattttt-ctgcct |
23653903 |
T |
|
| Q |
246 |
ttacatgtaactaatagaacatagtttgctcactttatagtgtgttaagcgcatgttgtgcttgaaataatcaaatatttttagcatttaaggagttgtt |
345 |
Q |
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| T |
23653902 |
ttatatataacaaatttaatacagtttgctctttttatagtgtattaagtggatggtgtgctcaaattaatgaaatatttttagcacttaaagagttgtt |
23653803 |
T |
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| Q |
346 |
aaaaa-cctctgcaaatttaaaatatttattaaatgtctcttatgtatattgatgtgttg |
404 |
Q |
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| T |
23653802 |
aaaaaccctatgtaaaattagaataattactaaatgtcttttgaatatatcgatgtgttg |
23653743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 176 - 237
Target Start/End: Original strand, 23618410 - 23618471
Alignment:
| Q |
176 |
aagaaatatggaaagaaatataattatggaataaatattcttaagagttttagccatatttt |
237 |
Q |
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| T |
23618410 |
aagaaataaggaaagaaatataatcatagcatacacaaacttaagagttttagccatatttt |
23618471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 366 - 418
Target Start/End: Original strand, 10980796 - 10980848
Alignment:
| Q |
366 |
aatatttattaaatgtctcttatgtatattgatgtgttgagtttgtcccttaa |
418 |
Q |
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| T |
10980796 |
aataattattaaaagtctcttaagtatattaatgtgtcgtgtttgtcccttaa |
10980848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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