View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13025_low_2 (Length: 334)
Name: NF13025_low_2
Description: NF13025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13025_low_2 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 19 - 334
Target Start/End: Original strand, 24836126 - 24836441
Alignment:
| Q |
19 |
ggtaaccatatttggaaatttgaatcatgtttctcattctatttcggatgttatagtcaattacaagcagattgacattggagaaatagaagacaagtat |
118 |
Q |
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| T |
24836126 |
ggtaaccatatttggaaatttgaatcatgtttctcattctatttcggatgttatagtcaattacaagcagattgacattggagaaatagaagacaagtat |
24836225 |
T |
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| Q |
119 |
tattatgctttggagaaataagaaaaatttgtataaagaagtgttgtaaattgcatcaatcatttccatgttggtgaagtactcttctcatgtttgttgc |
218 |
Q |
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| T |
24836226 |
tattatgctttggagaaataagaaaaatttgtataaagaagtgttgtaaattgcatcaatcatttccatgttggtgaagtactcttctcatgtttgttgc |
24836325 |
T |
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| Q |
219 |
tcaaagtttggaacaattagaaatgttgaatgtagcaaaaaccaatgtattgacgcatatgattgcaaatgacgaggaagatacttctaacacaagcaac |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24836326 |
tcaaagtttggaacaattagaaatgttgaatgtagcaacatccaatgtattgacgcatatgattgcaaatgacgaggaagatacttctaacacaagcaac |
24836425 |
T |
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| Q |
319 |
aaatagtttcgacttc |
334 |
Q |
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| T |
24836426 |
aaatagtttcgacttc |
24836441 |
T |
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