View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13026_high_2 (Length: 319)
Name: NF13026_high_2
Description: NF13026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13026_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 238; Significance: 1e-132; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 23 - 289
Target Start/End: Original strand, 1869583 - 1869849
Alignment:
| Q |
23 |
aaggatggattttccaaattgcaagacactactattaactactgaaagatgaagacttgcaaggtgggtcagtattttgagcaagatacccttttgtttc |
122 |
Q |
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| T |
1869583 |
aaggatggattttccaaattgcaagacactactattaactactgaaagatgaagacttgcaaggtgggtcagtattttgagcaagatacccttttgtttc |
1869682 |
T |
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| Q |
123 |
tcacaatggactatgacaagtacatcnnnnnnngacactcttgctttgatctctggaagagtattatcacttgttccacaattgtactcatctgaattca |
222 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
1869683 |
tcacaatggactatgacaagtacatctttttttgacactcttgctttgatctctggaagagtattatcacctgttccacaattgtactcatctgaattca |
1869782 |
T |
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| Q |
223 |
ctttggtccttttgttgctacaaatgtttgatccagcttcttgttctagctctctcacaggttctgc |
289 |
Q |
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| T |
1869783 |
ctttggtccttttgttgctacaaatgtttgatccagcttcttgttctagctctctcacacgttctgc |
1869849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 23 - 185
Target Start/End: Original strand, 1916748 - 1916910
Alignment:
| Q |
23 |
aaggatggattttccaaattgcaagacactactattaactactgaaagatgaagacttgcaaggtgggtcagtattttgagcaagatacccttttgtttc |
122 |
Q |
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|||||||||||||||||| | |||||| ||||| ||||||||||||||||||||| || |||||| ||||||||||||||||| ||||| ||||||||| |
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| T |
1916748 |
aaggatggattttccaaaattcaagactctactgttaactactgaaagatgaagattttcaaggtaggtcagtattttgagcagaataccattttgtttc |
1916847 |
T |
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| Q |
123 |
tcacaatggactatgacaagtacatcnnnnnnngacactcttgctttgatctctggaagagta |
185 |
Q |
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| T |
1916848 |
tcacaatggactatgacaagtacatctttttgtaacacttttgctttgacctctggaagagta |
1916910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 215 - 287
Target Start/End: Original strand, 1916916 - 1916988
Alignment:
| Q |
215 |
tgaattcactttggtccttttgttgctacaaatgtttgatccagcttcttgttctagctctctcacaggttct |
287 |
Q |
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|||| ||| ||||||||||||||| |||||||||| ||||||||||||| |||||||||||||||| ||||| |
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| T |
1916916 |
tgaactcagtttggtccttttgttagtacaaatgttggatccagcttcttcttctagctctctcacacgttct |
1916988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 176; Significance: 8e-95; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 23 - 287
Target Start/End: Original strand, 17488430 - 17488694
Alignment:
| Q |
23 |
aaggatggattttccaaattgcaagacactactattaactactgaaagatgaagacttgcaaggtgggtcagtattttgagcaagatacccttttgtttc |
122 |
Q |
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|||||||||||||||||| | |||||||||||| ||||||||||||||||||||| || ||||| |||||||||||||||||||||||| ||||||||| |
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| T |
17488430 |
aaggatggattttccaaaattcaagacactactgttaactactgaaagatgaagattttcaaggcaggtcagtattttgagcaagataccattttgtttc |
17488529 |
T |
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| Q |
123 |
tcacaatggactatgacaagtacatcnnnnnnngacactcttgctttgatctctggaagagtattatcacttgttccacaattgtactcatctgaattca |
222 |
Q |
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|||||||||||||||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
17488530 |
tcacaatggactatgacaagtacatcattttgtaacacttttgctttgacctctggaagagtattatcacttgttccacaactgtactcatctgaattca |
17488629 |
T |
|
| Q |
223 |
ctttggtccttttgttgctacaaatgtttgatccagcttcttgttctagctctctcacaggttct |
287 |
Q |
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| T |
17488630 |
ctttggtccttttgtttgtacaaatgttggatccatcttcttgttctagctctctcacacgttct |
17488694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 23 - 287
Target Start/End: Complemental strand, 17564784 - 17564520
Alignment:
| Q |
23 |
aaggatggattttccaaattgcaagacactactattaactactgaaagatgaagacttgcaaggtgggtcagtattttgagcaagatacccttttgtttc |
122 |
Q |
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|||||||||||||||||| | |||||||||||| ||||||||||||||||||||| || ||||| |||||||||||||||||||||||| ||||||||| |
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| T |
17564784 |
aaggatggattttccaaaattcaagacactactgttaactactgaaagatgaagattttcaaggcaggtcagtattttgagcaagataccattttgtttc |
17564685 |
T |
|
| Q |
123 |
tcacaatggactatgacaagtacatcnnnnnnngacactcttgctttgatctctggaagagtattatcacttgttccacaattgtactcatctgaattca |
222 |
Q |
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|||||||||||||||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
17564684 |
tcacaatggactatgacaagtacatcattttgtaacacttttgctttgacctctggaagagtattatcacttgttccacaactgtactcatctgaattca |
17564585 |
T |
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| Q |
223 |
ctttggtccttttgttgctacaaatgtttgatccagcttcttgttctagctctctcacaggttct |
287 |
Q |
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|||||||||||||||| |||||||||| |||||| ||||||||||||||||||||||| ||||| |
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| T |
17564584 |
ctttggtccttttgtttgtacaaatgttggatccatcttcttgttctagctctctcacacgttct |
17564520 |
T |
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